2020

Productions 2020

Hal publications for 2020

 

HAL : Dernières publications

  • [hal-02948750] Validation of Space-based albedo products from upscaled tower-based measurements over Heterogeneous and Homogeneous landscapes

    Surface albedo is a fundamental radiative parameter as it controls the Earth’s energy budget and directly affects the Earth’s climate. Satellite observations have long been used to capture the temporal and spatial variations of surface albedo because of their continuous global coverage. However, space-based albedo products are often affected by errors in the atmospheric correction, multi-angular bi-directional reflectance distribution function (BRDF) modelling, as well as spectral conversions. To validate space-based albedo products, an in situ tower albedometer is often used to provide continuous “ground truth” measurements of surface albedo over an extended area. Since space-based albedo and tower-measured albedo are produced at different spatial scales, they can be directly compared only for specific homogeneous land surfaces. However, most land surfaces are inherently heterogeneous with surface properties that vary over a wide range of spatial scales. In this work, tower-measured albedo products, including both directional hemispherical reflectance (DHR) and bi-hemispherical reflectance (BHR), are upscaled to coarse satellite spatial resolutions using a new method. This strategy uses high-resolution satellite derived surface albedos to fill the gaps between the albedometer’s field-of-view (FoV) and coarse satellite scales. The high-resolution surface albedo is generated from a combination of surface reflectance retrieved from high-resolution Earth Observation (HR-EO) data and moderate resolution imaging spectroradiometer (MODIS) BRDF climatology over a larger area. We implemented a recently developed atmospheric correction method, the Sensor Invariant Atmospheric Correction (SIAC), to retrieve surface reflectance from HR-EO (e.g., Sentinel-2 and Landsat-8) top-of-atmosphere (TOA) reflectance measurements. This SIAC processing provides an estimated uncertainty for the retrieved surface spectral reflectance at the HR-EO pixel level and shows excellent agreement with the standard Landsat 8 Surface Reflectance Code (LaSRC) in retrieving Landsat-8 surface reflectance. Atmospheric correction of Sentinel-2 data is vastly improved by SIAC when compared against the use of in situ AErosol RObotic NETwork (AERONET) data. Based on this, we can trace the uncertainty of tower-measured albedo during its propagation through high-resolution EO measurements up to coarse satellite scales. These upscaled albedo products can then be compared with space-based albedo products over heterogeneous land surfaces. In this study, both tower-measured albedo and upscaled albedo products are examined at Ground Based Observation for Validation (GbOV) stations (https://land.copernicus.eu/global/gbov/), and used to compare with satellite observations, including Copernicus Global Land Service (CGLS) based on ProbaV and VEGETATION 2 data, MODIS and multi-angle imaging spectroradiometer (MISR).

    ano.nymous@ccsd.cnrs.fr.invalid (Rui Song) 25 Oct 2023

    https://hal.inrae.fr/hal-02948750v1
  • [hal-03778635] The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data

    The FLUXNET2015 dataset provides ecosystem-scale data on CO 2 , water, and energy exchange between the biosphere and the atmosphere, and other meteorological and biological measurements, from 212 sites around the globe (over 1500 site-years, up to and including year 2014). These sites, independently managed and operated, voluntarily contributed their data to create global datasets. Data were quality controlled and processed using uniform methods, to improve consistency and intercomparability across sites. The dataset is already being used in a number of applications, including ecophysiology studies, remote sensing studies, and development of ecosystem and Earth system models. FLUXNET2015 includes derived-data products, such as gap-filled time series, ecosystem respiration and photosynthetic uptake estimates, estimation of uncertainties, and metadata about the measurements, presented for the first time in this paper. In addition, 206 of these sites are for the first time distributed under a Creative Commons (CC-BY 4.0) license. This paper details this enhanced dataset and the processing methods, now made available as open-source codes, making the dataset more accessible, transparent, and reproducible.

    ano.nymous@ccsd.cnrs.fr.invalid (Gilberto Pastorello) 16 Sep 2022

    https://hal.science/hal-03778635v1
  • [hal-02995533] Ecosystem transpiration and evaporation: Insights from three water flux partitioning methods across FLUXNET sites

    We apply and compare three widely applicable methods for estimating ecosystem transpiration (T) from eddy covariance (EC) data across 251 FLUXNET sites globally. All three methods are based on the coupled water and carbon relationship, but they differ in assumptions and parameterizations. Intercomparison of the three daily T estimates shows high correlation among methods (R between .89 and .94), but a spread in magnitudes of T/ET (evapotranspiration) from 45% to 77%. When compared at six sites with concurrent EC and sap flow measurements, all three EC‐based T estimates show higher correlation to sap flow‐based T than EC‐based ET. The partitioning methods show expected tendencies of T/ET increasing with dryness (vapor pressure deficit and days since rain) and with leaf area index (LAI). Analysis of 140 sites with high‐quality estimates for at least two continuous years shows that T/ET variability was 1.6 times higher across sites than across years. Spatial variability of T/ET was primarily driven by vegetation and soil characteristics (e.g., crop or grass designation, minimum annual LAI, soil coarse fragment volume) rather than climatic variables such as mean/standard deviation of temperature or precipitation. Overall, T and T/ET patterns are plausible and qualitatively consistent among the different water flux partitioning methods implying a significant advance made for estimating and understanding T globally, while the magnitudes remain uncertain. Our results represent the first extensive EC data‐based estimates of ecosystem T permitting a data‐driven perspective on the role of plants’ water use for global water and carbon cycling in a changing climate.

    ano.nymous@ccsd.cnrs.fr.invalid (Jacob Nelson) 07 Jun 2022

    https://hal.univ-lorraine.fr/hal-02995533v1
  • [hal-03029648] Diversity and potentiality of multi-criteria decision analysis methods for agri-food research

    AbstractThere is a growing demand for moving towards sustainable agri-food systems which per nature covers a complex network of activities and domains; such systems will benefit from multi-criteria decision analysis (MCDA) methods. Although some reviews on MCDA in agri-food research have been published, none of them covered the whole value chain. In this article, a corpus of 954 articles published by INRA scientists from 2007 to 2017 was used to study the diversity and potentiality of MCDA techniques. For the first time, experts from more than 10 agri-food domains worked altogether to annotate the articles, carry out a multivariate analysis, and finally interpret the statistical results to identify the specificities of certain domains and the complementarities between domains and to suggest avenues for future agri-food research. One-third of the studies were based only on a list of indicators, even when their purpose was to choose, sort, or rank options. Regardless of the scientific discipline in the agri-food sector, MCDA studies rarely considered temporal dynamics, spatial scale changes, or stakeholder contributions. As the agri-food system becomes increasingly sustainable in the near future, the use of MCDA methods will accelerate. To become more effective, they will have to include ecosystem services, even outside the scope of ecological studies. Similarly, MCDA studies will need to include participatory science to involve stakeholders (i.e., public authorities, governmental agencies) and end-users (i.e., farmers, producers, industrials, consumers) in the construction of the multi-criteria evaluation but also in the resulting decisions.

    ano.nymous@ccsd.cnrs.fr.invalid (Geneviève Gésan-Guiziou) 22 Nov 2021

    https://hal.inrae.fr/hal-03029648v1
  • [hal-02434220] TRY plant trait database – enhanced coverage and open access

    Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration , biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.

    ano.nymous@ccsd.cnrs.fr.invalid (Jens Kattge) 09 Nov 2020

    https://amu.hal.science/hal-02434220v1
  • [hal-02942642] Sensitivity of gross primary productivity to climatic drivers during the summer drought of 2018 in Europe

    In summer 2018, Europe experienced a record drought, but it remains unknown how the drought affected ecosystem carbon dynamics. Using observations from 34 eddy covariance sites in different biomes across Europe, we studied the sensitivity of gross primary productivity (GPP) to environmental drivers during the summer drought of 2018 versus the reference summer of 2016. We found a greater drought-induced decline of summer GPP in grass- lands (−38%) than in forests (−10%), which coincided with reduced evapotranspiration and soil water content (SWC). As com- pared to the ‘normal year’ of 2016, GPP in different ecosystems exhibited more negative sensitivity to summer air temperature (Ta) but stronger positive sensitivity to SWC during summer drought in 2018, that is, a stronger reduction of GPP with soil moisture deficit. We found larger negative effects of Ta and vapour pressure deficit (VPD) but a lower positive effect of photosynthetic photon flux density on GPP in 2018 compared to 2016, which contributed to reduced summer GPP in 2018. Our results demonstrate that high temperature-induced increases in VPD and decreases in SWC aggravated drought impacts on GPP.

    ano.nymous@ccsd.cnrs.fr.invalid (Zheng Fu) 18 Sep 2020

    https://hal.inrae.fr/hal-02942642v1
  • [hal-02541780] Carbon-nitrogen interactions in European forests and semi-natural vegetation - Part 1: Fluxes and budgets of carbon, nitrogen and greenhouse gases from ecosystem monitoring and modelling

    The impact of atmospheric reactive nitrogen (Nr) deposition on carbon (C) sequestration in soils and biomass of unfertilized, natural, semi-natural and forest ecosystems has been much debated. Many previous results of this dC∕dN response were based on changes in carbon stocks from periodical soil and ecosystem inventories, associated with estimates of Nr deposition obtained from large-scale chemical transport models. This study and a companion paper (Flechard et al., 2020) strive to reduce uncertainties of N effects on C sequestration by linking multi-annual gross and net ecosystem productivity estimates from 40 eddy covariance flux towers across Europe to local measurement-based estimates of dry and wet Nr deposition from a dedicated collocated monitoring network. To identify possible ecological drivers and processes affecting the interplay between C and Nr inputs and losses, these data were also combined with in situ flux measurements of NO, N2O and CH4 fluxes; soil NO−3 leaching sampling; and results of soil incubation experiments for N and greenhouse gas (GHG) emissions, as well as surveys of available data from online databases and from the literature, together with forest ecosystem (BASFOR) modelling.

    ano.nymous@ccsd.cnrs.fr.invalid (Chris Flechard) 15 Jul 2020

    https://hal.inrae.fr/hal-02541780v1
  • [hal-03014264] Snow cover duration trends observed at sites and predicted by multiple models

    Abstract. Thirty-year simulations of seasonal snow cover in 22 physically based models driven with bias-corrected meteorological reanalyses are examined at four sites with long records of snow observations. Annual snow cover durations differ widely between models but interannual variations are strongly correlated because of the common driving data. No significant trends are observed in starting dates for seasonal snow cover, but there are significant trends towards snow cover ending earlier at two of the sites in observations and most of the models. A simplified model with just two parameters controlling solar radiation and sensible heat contributions to snowmelt spans the ranges of snow cover durations and trends. This model predicts that sites where snow persists beyond annual peaks in solar radiation and air temperature will experience rapid decreases in snow cover duration with warming as snow begins to melt earlier and at times of year with more energy available for melting.

    ano.nymous@ccsd.cnrs.fr.invalid (Richard Essery) 05 Jan 2021

    https://hal.science/hal-03014264v2
  • [hal-03040768] Water potential control of turgor‐driven tracheid enlargement in Scots pine at its xeric distribution edge

    The extent to which water availability can be used to predict the enlargement and final dimensions of xylem conduits remains an open issue. We reconstructed the time course of tracheid enlargement in Pinus sylvestris trees in central Spain by repeated measurements of tracheid diameter on microcores sampled weekly during a 2 yr period. We analyzed the role of water availability in these dynamics empirically through time-series correlation analysis and mechanistically by building a model that simulates daily tracheid enlargement rate and duration based on Lockhart's equation and water potential as the sole input. Tracheid enlargement followed a sigmoid-like time course, which varied intra- and interannually. Our empirical analysis showed that final tracheid diameter was strongly related to water availability during tracheid enlargement. The mechanistic model was calibrated and successfully validated (R-2 = 0.92) against the observed tracheid enlargement time course. The model was also able to reproduce the seasonal variations of tracheid enlargement rate, duration and final diameter (R-2 = 0.84-0.99). Our results support the hypothesis that tracheid enlargement and final dimensions can be modeled based on the direct effect of water potential on turgor-driven cell expansion. We argue that such a mechanism is consistent with other reported patterns of tracheid dimension variation.

    ano.nymous@ccsd.cnrs.fr.invalid (Antoine Cabon) 17 Jan 2025

    https://hal.inrae.fr/hal-03040768v1
  • [hal-02650649] Long-term thermal sensitivity of Earth’s tropical forests

    The sensitivity of tropical forest carbon to climate is a key uncertainty in predicting global climate change. Although short-term drying and warming are known to affect forests, it is unknown if such effects translate into long-term responses. Here, we analyze 590 permanent plots measured across the tropics to derive the equilibrium climate controls on forest carbon. Maximum temperature is the most important predictor of aboveground biomass (−9.1 megagrams of carbon per hectare per degree Celsius), primarily by reducing woody productivity, and has a greater impact per °C in the hottest forests (>32.2°C). Our results nevertheless reveal greater thermal resilience than observations of short-term variation imply. To realize the long-term climate adaptation potential of tropical forests requires both protecting them and stabilizing Earth’s climate.

    ano.nymous@ccsd.cnrs.fr.invalid (Martin J P Sullivan) 17 Aug 2024

    https://hal.umontpellier.fr/hal-02650649v1
  • [hal-02948752] Lack of effect of admixture proportion and tree density on water acquisition depth for European beech (Fagus sylvatica L.) and sycamore maple (Acer pseudoplatanus L.)

    AbstractKey messageIn a mixed,Fagus sylvaticaL.-Acer pseudoplatanusL., young plantation, trees of both species absorbed water from superficial soil layers despite the presence of roots and water in deeper layers. Admixture proportion and tree density were weak predictors of water acquisition depth, as well as fine root vertical distribution, although it might be due to distinct periods of root and isotope investigations.ContextPromoting mixed forests and reducing stand densities have been proposed as effective ways to maintain the productivity of temperate planted forest stands in a changing climate.AimsThe objective of this study was to analyse how stand density and the degree of admixture of European beech and sycamore maple interactively influenced the water acquisition profile of individual trees.MethodsWe used a stable isotope (deuterium) approach to determine the profiles of soil water acquisition of both species in a 16-year-old plantation where trees had been planted along crossed gradients of tree density and species proportion. The profiles were then compared with the vertical distribution of fine root of these species in the plantation.ResultsAll the target trees mostly absorbed soil water from the first few centimetres of soil despite homogenous vertical water availability and the fact that a great part of the fine root biomass was located below 10 cm. Admixture proportion and tree density had negligible effects on soil water acquisition depth.ConclusionNo vertical differentiation of soil water acquisition between the two species was observed, suggesting that mixing these species does not promote reduction of belowground competition for resource acquisition. The vertical distribution of fine root may be a weak predictor of water acquisition depth.

    ano.nymous@ccsd.cnrs.fr.invalid (Alexandre Fruleux) 05 Apr 2021

    https://hal.inrae.fr/hal-02948752v1
  • [hal-02534416] Selecting for water use efficiency, wood chemical traits and biomass with genomic selection in a Eucalyptus breeding program

    The selection of ideotypes combining high biomass production, high water use efficiency (WUE) and adequate wood properties is a major challenge in improving forest trees for industrial plantations. This issue was addressed in a field experiment evaluating 1130 clones of Eucalyptus urophylla * Eucalyptus grandis. Genomic selection using 3303 SNPs and the GBLUP model was carried out at age 55 months to select genitors and clones for stem volume (V55), WUE (using stable carbon isotope composition in stemwood, δ13C as a proxy, transformed into intrinsic WUE, Wi), as well as lignin (KL) and holocellulose (HCEL) contents. The variance components were mainly additive for δ13C(Wi), KL and HCEL, while they were highly non-additive for V55 (the ratio of dominance to additive variance was 130%). The narrow sense heritability was higher for Wi (h2 = 0.704) than for volume and wood traits (<0.5), showing that this trait was under strong genetic control. Additive and total genetic correlations among traits were low (between −0.260 and 0.260) as were the correlations due to environmental effects (between −0.267 and 0.344), which suggests a rather independence among traits. The equal emphasis and the desired gain index selection methods were used to assess economic weights and to estimate the expected additive and total genetic gains. Different breeding objectives were defined with percentages weighting the economic coefficients or the desired gain for the equal emphasis or desired gain method, respectively. When the breeding objective gave emphasis to volume production using the percentages of 70%, 10%, 10%, and 10% for V55, HCEL, KL and Wi, respectively, positive gains were observed in both methods, but the correlation between index rankings were 0.686 and 0.635 for breeding and clonal selection, respectively. With a more balanced breeding objective using percentages such as 25%, 25%, 25%, 25% for V55, HCEL, KL and Wi, respectively, both index methods gave close positive gains and similar rankings, the correlation between index rankings ranging from 0.941 to 0.982 for parent selection and from 0.883 to 0.903 for clone selection. With more contrasted percentages between V55 and Wi, such as (80%, 10%, 10%, 0%) or (90%, 10%, 10%, −10%), the gain increased for V55 and was close to the maximum and decreased markedly for Wi. This study explores the magnitude of economic coefficients for index selection and shows that positive genetic gains can be achieved by associating biomass, a proxy of WUE and wood chemical traits. It provides encouraging results for selecting Eucalyptus varieties adapted to dry zones while maintaining good performances regarding other economic traits.

    ano.nymous@ccsd.cnrs.fr.invalid (Jean-Marc Bouvet) 22 Aug 2022

    https://hal.inrae.fr/hal-02534416v1
  • [hal-02938719] In situ 13CO2 labelling of rubber trees reveals a seasonal shift in the contribution of the carbon sources involved in latex regeneration

    Rubber trees (Hevea brasiliensis) are the main source of natural rubber, extracted from latex, which exudes from the trunk after tapping. Tapped trees require large amounts of carbon (C) to regenerate the latex after its collection. Knowing the contribution of C sources involved in latex biosynthesis will help in understanding how rubber trees face this additional C demand. Whole crown 13CO2 pulse labelling was performed on 4-year-old rubber trees in June, when latex production was low, and in October, when it was high. 13C content was quantified in the foliage, phloem sap, wood, and latex. In both labelling periods, 13C was recovered in latex just after labelling, indicating that part of the carbohydrate was directly allocated to latex. However, significant amounts of 13C were still recovered in latex after 100 d and the peak was reached significantly later than in phloem sap, demonstrating the contribution of a reserve pool as a source of latex C. The contribution of new photosynthates to latex regeneration was faster and higher when latex metabolism was well established, in October, than in June. An improved understanding of C dynamics and the source–sink relationship in rubber tree is crucial to adapt tapping system practices and ensure sustainable latex production.

    ano.nymous@ccsd.cnrs.fr.invalid (Ornuma Duangngam) 15 Sep 2020

    https://hal.science/hal-02938719v1
  • [hal-03051411] Energy, water and carbon exchanges in managed forest ecosystems: description, sensitivity analysis and evaluation of the INRAE GO+ model, version 3.0

    The mechanistic model GO+ describes the functioning and growth of managed forests based upon biophysical and biogeochemical processes. The biophysical and biogeochemical processes included are modelled using standard formulations of radiative transfer, convective heat exchange, evapotranspiration, photosynthesis, respiration, plant phenology, growth and mortality, biomass nutrient content, and soil carbon dynamics. The forest ecosystem is modelled as three layers, namely the tree overstorey, understorey and soil. The vegetation layers include stems, branches and foliage and are partitioned dynamically between sunlit and shaded fractions. The soil carbon submodel is an adaption of the Roth-C model to simulate the impact of forest operations. The model runs at an hourly time step. It represents a forest stand covering typically 1 ha and can be straightforwardly upscaled across gridded data at regional, country or continental levels. GO+ accounts for both the immediate and long-term impacts of forest operations on energy, water and carbon exchanges within the soil–vegetation–atmosphere continuum. It includes exhaustive and versatile descriptions of management operations (soil preparation, regeneration, vegetation control, selective thinning, clear-cutting, coppicing, etc.), thus permitting the effects of a wide variety of forest management strategies to be estimated: from close to nature to intensive. This paper examines the sensitivity of the model to its main parameters and estimates how errors in parameter values are propagated into the predicted values of its main output variables.The sensitivity analysis demonstrates an interaction between the sensitivity of variables, with the climate and soil hydraulic properties being dominant under dry conditions but the leaf biochemical properties being most influential with wet soil. The sensitivity profile of the model changes from short to long timescales due to the cumulative effects of the fluxes of carbon, energy and water on the stand growth and canopy structure. Apart from a few specific cases, the model simulations are close to the values of the observations of atmospheric exchanges, tree growth, and soil carbon and water stock changes monitored over Douglas fir, European beech and pine forests of different ages. We also illustrate the capacity of the GO+ model to simulate the provision of key ecosystem services, such as the long-term storage of carbon in biomass and soil under various management and climate scenarios.

    ano.nymous@ccsd.cnrs.fr.invalid (Virginie Moreaux) 10 Dec 2020

    https://hal.inrae.fr/hal-03051411v1
  • [hal-03207504] Altered energy partitioning across terrestrial ecosystems in the European drought year 2018

    Drought and heat events, such as the 2018 European drought, interact with the exchange of energy between the land surface and the atmosphere, potentially affecting albedo, sensible and latent heat fluxes, as well as CO 2 exchange. Each of these quantities may aggravate or mitigate the drought, heat, their side effects on productivity, water scarcity and global warming. We used measurements of 56 eddy covariance sites across Europe to examine the response of fluxes to extreme drought prevailing most of the year 2018 and how the response differed across various ecosystem types (forests, grasslands, croplands and peatlands). Each component of the surface radiation and energy balance observed in 2018 was compared to available data per site during a reference period 2004–2017. Based on anomalies in precipitation and reference evapotranspiration, we classified 46 sites as drought affected. These received on average 9% more solar radiation and released 32% more sensible heat to the atmosphere compared to the mean of the reference period. In general, drought decreased net CO 2 uptake by 17.8%, but did not significantly change net evapotranspiration. The response of these fluxes differed characteristically between ecosystems; in particular, the general increase in the evaporative index was strongest in peatlands and weakest in croplands. This article is part of the theme issue ‘Impacts of the 2018 severe drought and heatwave in Europe: from site to continental scale’.

    ano.nymous@ccsd.cnrs.fr.invalid (Alexander Graf) 25 Apr 2021

    https://hal.inrae.fr/hal-03207504v1
  • [hal-02957456] Non-stomatal processes reduce gross primary productivity in temperate forest ecosystems during severe edaphic drought

    Severe drought events are known to cause important reductions of gross primary productivity (GPP) in forest ecosystems. However, it is still unclear whether this reduction originates from stomatal closure (Stomatal Origin Limitation) and/or non-stomatal limitations (Non-SOL). In this study, we investigated the impact of edaphic drought in 2018 onGPPand its origin (SOL, NSOL) using a dataset of 10 European forest ecosystem flux towers. In all stations whereGPPreductions were observed during the drought, these were largely explained by declines in the maximum apparent canopy scale carboxylation rateV(CMAX,APP)(NSOL) when the soil relative extractable water content dropped below around 0.4. Concurrently, we found that the stomatal slope parameter (G(1), related to SOL) of the Medlynet al. unified optimization model linking vegetation conductance andGPPremained relatively constant. These results strengthen the increasing evidence that NSOL should be included in stomatal conductance/photosynthesis models to faithfully simulate bothGPPand water fluxes in forest ecosystems during severe drought. This article is part of the theme issue 'Impacts of the 2018 severe drought and heatwave in Europe: from site to continental scale'.

    ano.nymous@ccsd.cnrs.fr.invalid (Louis Gourlez de La Motte) 05 Oct 2020

    https://hal.inrae.fr/hal-02957456v1
  • [hal-03179773] Temporal trends in tree defoliation and response to multiple biotic and abiotic stresses

    The vitality of forests depends on multiple biotic and abiotic stresses that can act in an interactive way. Tree defoliation levels are therefore subject to long-term changes and shorter-term hazards that need to be monitored in the context of ongoing climate change. In this study, we analysed the combined effects of drought, insect attack and tree nutritional status on the level of defoliation in three major hardwood species in Europe: European beech (Fagus sylvatica), sessile oak (Quercus petraea) and pedunculate oak (Quercus robur). The forest condition data set was collected in the long-term intensive monitoring network in France (RENECOFOR). The average level of defoliation observed was 20% but varied considerably between plots and trees. From 1997 to 2015, beech defoliation worsened by 10% while oak defoliation stabilized over time. For the three tree species, crown defoliation was generally higher in the event of insect attack (increased by 2.6% to 7.5% depending on the tree species) and under drought (increased by 5.9%), while the effect of the tree nutritional statue was less consistent (from - 5.6% to + 10%) these factors acting synergistically. This study highlights the fact that the different stresses a tree species undergoes act in a complex and interactive way, with species-specific responses. In a context of increasing abiotic and biotic stresses, their combined analysis appears to be a necessity at a time when forest owners need to adapt their management to cope with climate change, particularly through the choice of tree species to be favoured in the future.

    ano.nymous@ccsd.cnrs.fr.invalid (Maude Toïgo) 25 Aug 2022

    https://hal.inrae.fr/hal-03179773v1
  • [hal-02527995] Distribution of soil properties along forest-grassland interfaces: Influence of permanent environmental factors or land-use after-effects?

    Soil properties vary spatially according to land use; both because land users have selected specific soil properties for specific land uses, and land uses modify the soil properties. However, permanent environment factors and land-use effects are unlikely to display the exact same spatial patterns. Study of the spatial and historical patterns of distribution of soil properties could help to separate between these two causes. In this aim, we studied 22 forest-grassland interfaces with controlled historical configurations in northeast France. In each land use (forest and grassland), three distances to the edge (edge, periphery and core) and two land-use histories (ancient and recent) were studied.Along forest-grassland interfaces, forests were usually located slightly upslope of grasslands, and mainly because this non-random topographic position the topsoil texture was significantly more silty in forests, and clayey in grasslands. After statistically controlling for the effects of topography and soil texture, we observed two main gradients of variation in soil properties according to the distance-to-edge (acidity in forest and nutrient content in grassland). In forest, pH and Ca dropped from the edges to the peripheries (15 m distance), while in grassland, C, N, P and Na sharply increased from the edges to the cores (25 m distance). These results demonstrate, through the edge effect, the strong influence of the land use on a part of soil properties. Furthermore, less than two centuries after grassland afforestation or deforestation, we observed that soil properties in recent forests and recent grasslands were respectively closer to their current land use than to their former land use. These results demonstrate a rapid change in soil properties after land-use change. However, recent forests and recent grasslands kept a legacy of soil texture from their former land use, respectively. Recent grasslands also kept a lower soil density, N and Na content compared to ancient grasslands.Hence, this study of forest-grassland interfaces show strong and short-scale relationships between land use and soil properties and suggest that they express both original choices of land users for specific soil properties and land-use after-effects. The non-random topographic position of the forest-grassland interfaces indicates a conscious choice of this positioning by the land users, for agronomic reasons. Beyond that, land use, through vegetation composition and management practices, also has a strong impact on soil properties. The fact that land-use changes affect most soil properties after only a few decades confirms the existence of land-use effects over time.

    ano.nymous@ccsd.cnrs.fr.invalid (Maxime Burst) 21 Dec 2021

    https://hal.inrae.fr/hal-02527995v1
  • [hal-02948795] A portable, low-cost relaxed eddy accumulation (REA) system for quantifying ecosystem-level fluxes of volatile organics

    Quantification of biogenic volatile organic compound (BVOC) fluxes into the atmosphere is crucial to understand their role in atmospheric oxidation and biogeochemical cycles. BVOC flux measurements were carried out in nine forest ecosystems using a relaxed eddy accumulation (REA) based sampling system, which is easily transportable, simple to operate and designed to be low-cost and therefore can easily be deployed at multiple remote locations. The REA measurements were carried out during daytime between 06:00 and 18:30 (Local Time) with a flux averaging period of 30 min. A detailed description of the REA sampling setup, operational procedure and validation by comparison with full eddy covariance (EC) BVOC flux measurements is provided. BVOC flux measurements from established long-term carbon and water flux tower sites in nine forest ecosystems are compared including Manitou Forest Observatory in Colorado, USA (pine woodland forest), Niwot Ridge AmeriFlux site in Colorado, USA (subalpine forest), Deer Canyon Preserve in New Mexico, USA (pinyon-juniper forest), Lei bamboo forest site near Taihuyuan, China, Qianyanzhou ChinaFLUX site in China (pine forest), Baskett Wildfire Refuge MOFlux site in Missouri, USA (deciduous oak forest), University of Michigan Biological Station PROPHET site in Michigan, USA (mixed deciduous forest), Changbai Mountain Forest Research Station in China (mixed deciduous forest) and the Guyaflux site (GF-Guy) in French Guiana (tropical rainforest). BVOC flux measurements using our REA setup confirm dominance of 2,3,2- methylbutenol (2,3,2-MBO) at the Manitou Forest Observatory and Niwot Ridge sites in Colorado. Monoterpene fluxes measured by REA showed good agreement (within ±10%) with monoterpene fluxes measured by PTR-MS at the Manitou Forest Observatory. The MOFlux site in Missouri was dominated by isoprene emissions (average flux of ~ 9.5 mg m−2 h−1) whereas the Deer Canyon site was dominated by α-pinene emissions (average flux ~ 0.73 mg m−2 h−1). Mixed deciduous forest sites at the PROPHET Station in Michigan and Changbai Mountain Forest Research Station in China primarily emitted isoprene along with some α-pinene, β-pinene and d-Limonene. Isoprene and α-pinene were the dominant BVOCs emitted from the subtropical Lei bamboo plantation at the Taihuyuan site in China while the pine forest site at Qianyanzhou in China were dominated by α-pinene emissions along with significant isoprene. BVOC measurements across different seasons (during 2009–2011) at a tropical forest site in French Guiana (Guyaflux site) revealed the dominance of isoprene emissions during all seasons. Irrespective of the type of the forest ecosystem, α-pinene was among the dominant monoterpenes emitted from all nine forests.

    ano.nymous@ccsd.cnrs.fr.invalid (Chinmoy Sarkar) 31 Aug 2021

    https://hal.inrae.fr/hal-02948795v1
  • [hal-03006008] Soil properties explain tree growth and mortality, but not biomass, across phosphorus-depleted tropical forests

    We observed strong positive relationships between soil properties and forest dynamics of growth and mortality across twelve primary lowland tropical forests in a phosphorus-poor region of the Guiana Shield. Average tree growth (diameter at breast height) increased from 0.81 to 2.1 mm yr−1 along a soil texture gradient from 0 to 67% clay, and increasing metal-oxide content. Soil organic carbon stocks in the top 30 cm ranged from 30 to 118 tons C ha−1, phosphorus content ranged from 7 to 600 mg kg−1 soil, and the relative abundance of arbuscular mycorrhizal fungi ranged from 0 to 50%, all positively correlating with soil clay, and iron and aluminum oxide and hydroxide content. In contrast, already low extractable phosphorus (Bray P) content decreased from 4.4 to <0.02 mg kg−1 in soil with increasing clay content. A greater prevalence of arbuscular mycorrhizal fungi in more clayey forests that had higher tree growth and mortality, but not biomass, indicates that despite the greater investment in nutrient uptake required, soils with higher clay content may actually serve to sustain high tree growth in tropical forests by avoiding phosphorus losses from the ecosystem. Our study demonstrates how variation in soil properties that retain carbon and nutrients can help to explain variation in tropical forest growth and mortality, but not biomass, by requiring niche specialization and contributing to biogeochemical diversification across this region.

    ano.nymous@ccsd.cnrs.fr.invalid (Jennifer Soong) 24 Jun 2022

    https://hal.science/hal-03006008v1
  • [hal-03040751] New developments in understanding plant water transport under drought stress

    [...]

    ano.nymous@ccsd.cnrs.fr.invalid (Amanda A Cardoso) 04 Dec 2020

    https://hal.inrae.fr/hal-03040751v1
  • [hal-02652095] Decreasing stand density favors resistance, resilience, and recovery of Quercus petraea trees to a severe drought, particularly on dry sites

    Key message Decreasing stand density increases resistance, resilience, and recovery ofQuercus petraeatrees to severe drought (2003), particularly on dry sites, and the effect was independent of tree social status. Context Controlling competition is an advocated strategy to modulate the response of trees to predicted changes in climate. Aims We investigated the effects of stand density (low, medium, high; relative density index 0.20, 0.53, 1.04), social status (dominant, codominant, suppressed), and water balance (dry, mesic, wet; summer water balance - 182, - 126, - 96 mm) on the climate-growth relationships (1997-2012) and resistance (Rt), resilience (Rs), and recovery (Rc) following the 2003 drought. Methods Basal area increments were collected by coring (269 trees) in young stands (28 +/- 7.5 years in 2012) of sessile oak (Quercus petraea) in a French permanent network of silvicultural plots. Results We showed that the climate-growth relationships depend on average site-level water balance with trees highly dependent on spring and summer droughts on dry and mesic sites and not at all on wet sites. Neither stand density nor social status modulated mean response to climate. Decreasing stand density increased Rt, Rs, and Rc particularly on dry sites. The effect was independent of tree social position within the stand. Conclusion Reducing stand density mitigates more the effect of extreme drought events on drier sites than on wet sites.

    ano.nymous@ccsd.cnrs.fr.invalid (Anna Schmitt) 14 Aug 2020

    https://hal.inrae.fr/hal-02652095v1
  • [hal-03038558] Dernières innovations sur la plantation forestière. Contribution de la R&D pour accompagner les évolutions attendues dans les pratiques

    [...]

    ano.nymous@ccsd.cnrs.fr.invalid (Catherine C. Collet) 03 Dec 2020

    https://hal.inrae.fr/hal-03038558v1
  • [hal-02927318] How does contemporary selection shape oak phenotypes?

    Most existing forests are subjected to natural and human-mediated selection pressures, which have increased due to climate change and the increasing needs of human societies for wood, fibre and fuel resources. It remains largely unknown how these pressures trigger evolutionary changes. We address this issue here for temperate European oaks (Quercus petraeaandQ. robur), which grow in mixed stands, under even-aged management regimes. We screened numerous functional traits for univariate selection gradients and for expected and observed genetic changes over two successive generations. In both species, growth, leaf morphology and physiology, and defence-related traits displayed significant selection gradients and predicted shifts, whereas phenology, water metabolism, structure and resilience-related traits did not. However, the direction of the selection response and the potential for adaptive evolution differed between the two species.Quercus petraeahad a much larger phenotypic and genetic variance of fitness thanQ. robur. This difference raises concerns about the adaptive response ofQ. roburto contemporary selection pressures. Our investigations suggest thatQ. roburwill probably decline steadily, particularly in mixed stands withQ. petraea, consistent with the contrasting demographic dynamics of the two species.

    ano.nymous@ccsd.cnrs.fr.invalid (Hermine Alexandre) 01 Sep 2020

    https://hal.inrae.fr/hal-02927318v1
  • [hal-02963149] Le profil cultural : une méthode d'observation pour analyser les impacts de la préparation mécanisée du site sur la structure du sol

    Face à la problématique du renouvellement forestier en stations contraignantes, la R&D s’attache à concevoir, tester et évaluer des techniques appropriées de préparation mécanisée du sol avant plantation. L’évaluation s’appuie légitimement sur la survie et la croissance des plants. Mais pour interpréter les résultats, il faut aussi pouvoir caractériser et analyser les effets sur le sol et ses propriétés. C’est l’objet d’une méthode développée en agronomie et qu’on peut adapter au milieu forestier : le profil cultural. Voyons de quoi il s’agit.

    ano.nymous@ccsd.cnrs.fr.invalid (Florian Vast) 14 Oct 2020

    https://hal.science/hal-02963149v1
  • [hal-03037487] Cultivation profile: a visual evaluation method of soil structure adapted to the analysis of the impacts of mechanical site preparation in forest plantations

    Mechanical site preparation (MSP) is widely used in forestry to improve plantation success. Although it is known to alter soil properties, its direct effects on soil structure have rarely been described. The cultivation profile is a visual soil evaluation (VSE) method developed in agricultural research to analyse the impacts of cultivation practices on soil structure. The objective of the study was to adapt the method to forest plantations in order to analyse the effects of MSP on soil quality. Cultivation profiles were performed in six experimental plantation sites located in Northern France. The method made it possible to compare the impacts on soil structure of three MSP methods. It provided a schematic representation of the soil structural quality and a quantitative estimation of the volume of soil favourable to seedling root growth. It also highlighted unexpected negative effects of some MSP methods on soil structure, such as the creation of small cavities, the presence of compacted soil volumes due to wheel tracks or smeared soil volumes due to tool pass, and the pseudogleisation of soil zones due to changes in water circulation in the soil. The relevance and limitations of VSE methods in the context of forest plantation as well as the expected future development of the methods are discussed.

    ano.nymous@ccsd.cnrs.fr.invalid (Catherine Collet) 03 Dec 2020

    https://hal.inrae.fr/hal-03037487v1
  • [hal-02544340] Comment l'Office national des forêts anticipe les effets du changement climatique ?

    En charge de la gestion de onze millions d'hectares de forêts publiques, dont 4,6 millions d’hectares en métropole, l’Office national des forêts (ONF) est un acteur majeur de la filière forêt-bois en France. Depuis 2005, le changement climatique s’est imposé à l’ONF comme une priorité de recherche et de développement. Pour adapter les forêts au climat de demain et préserver les stocks de carbone, son département « Recherche développement et innovation » s’est rapproché des acteurs de la recherche en France. Dans cet article, les auteurs font le point des travaux et actions menés au cours des quatorze dernières années et de leur appropriation par les services de gestion.

    ano.nymous@ccsd.cnrs.fr.invalid (Myriam Legay) 21 Apr 2020

    https://hal.science/hal-02544340v1
  • [hal-02544285] La croissance des forêts et les changements environnementaux

    Les forêts de l’hémisphère nord sont plus productives qu’il y a plusieurs décennies. Telle est la tendance observée et quantifiée dans différentes études menées depuis les années 1970 et qui mettent en cause plusieurs facteurs : les modifications des régimes pluviothermiques, les dépôts azotés et l’augmentation de la concentration atmosphérique en dioxyde de carbone. À partir de données de l’inventaire forestier national, les auteurs de cet article se sont penchéssur l’évolution des forêts françaises. Leurs résultats à des échelles plus fines mettent en évidence des variations extrêmes (négative et positive) liées aux espèces et au contexte environnemental local qu’il conviendrait de suivre en « temps réel » compte tenu des grandes incertitudes futures liées au climat.

    ano.nymous@ccsd.cnrs.fr.invalid (François F. Lebourgeois) 21 Apr 2020

    https://hal.science/hal-02544285v1
  • [hal-03038406] How does oak mast seeding affect the feeding behavior of sympatric red and roe deer?

    Oak reproduction is characterized by mast seeding with high inter-annual fluctuations in fruit production. Such resource pulses can greatly affect ecosystem functioning and may cause seed consumers to alter their mobility, demography, or diet. Consequences of mast seeding for seed consumers remain poorly understood as their long timescale makes them difficult to study. We investigated impacts of oak mast seeding on the feeding behavior of two sympatric European deer species: red deer (Cervus elaphus) and roe deer (Capreolus capreolus). We analyzed their rumen content over a 31-year period in tandem with 10 years of data on oak fructification (i.e. 8 years of field monitoring and two modelled years). Acorn production is strongly correlated with consumption by both deer species. In years of high fructification, acorns represent more than 50% and 35% of red and roe deer diet, respectively, confirming assumptions that deer favor acorns when these are available. Red deer eat more acorns than roe deer both between and within years. High acorn production in mast years appears to saturate the capacity of deer to consume acorns. As the proportion of acorns increase in their diet, red deer eat more grasses and less conifer browse. No dietary shift was found for roe deer. By inducing dietary shifts in consumers, oak mast seeding can have cascading effects on ecosystem processes, notably on the damages on conifers caused by red deer and the consequences for forest dynamics.

    ano.nymous@ccsd.cnrs.fr.invalid (Julien Barrere) 22 Aug 2022

    https://hal.inrae.fr/hal-03038406v1
  • [hal-02870299] Which oak provenances for the 22nd century in Western Europe? Dendroclimatology in common gardens

    The current distribution area of the two sympatric oaks Quercus petraea and Q. robur covers most of temperate Western Europe. Depending on their geographic location, populations of these trees are exposed to different climate constraints, to which they are adapted. Comparing the performances of trees from contrasting populations provides the insight into their expected resilience to future climate change required for forest management. In this study, the descendants of 24 Q. petraea and two Q. robur provenances selected from sites throughout Europe were grown for 20 years in three common gardens with contrasting climates. The 2420 sampled trees allowed the assessments of the relationship between radial growth and climate. An analysis of 15-year chronologies of ring widths, with different combinations of climate variables, revealed different response patterns between provenances and between common gardens. As expected, provenances originating from sites with wet summers displayed the strongest responses to summer drought, particularly in the driest common garden. All provenances displayed positive significant relationships between the temperature of the previous winter and radial growth when grown in the common garden experiencing the mildest winter temperatures. Only eastern provenances from continental cold climates also clearly expressed this limitation of growth by cold winter temperatures in the other two common gardens. However, ecological distance, calculated on the basis of differences in climate between the site of origin and the common garden, was not clearly related to the radial growth responses of the provenances. This suggests that the gradient of genetic variability among the selected provenances was not strictly structured according to climate gradients. Based on these results, we provide guidelines for forest managers for the assisted migration of Quercus petraea and Q. robur provenances.

    ano.nymous@ccsd.cnrs.fr.invalid (Didier Bert) 08 Jan 2021

    https://hal.science/hal-02870299v1
  • [hal-03040730] In situ estimation of genetic variation of functional and ecological traits in Quercus petraea and Q. robur

    Predicting the evolutionary potential of natural tree populations requires the estimation of heritability and genetic correlations among traits on which selection acts, as differences in evolutionary success between species may rely on differences for these genetic parameters. In situ estimates are expected to be more accurate than measures done under controlled conditions which do not reflect the natural environmental variance. The aim of the current study was to estimate three genetic parameters (i.e., heritability, evolvability, and genetic correlations) in a natural mixed oak stand composed of Quercus petraea and Quercus robur about 100 years old, for 58 traits of ecological, and functional relevance (growth, reproduction, phenology, physiology, resilience, structure, morphology, and defense). First, we estimated genetic parameters directly in situ using realized genomic relatedness of adult trees and parentage relationships over two generations to estimate the traits' additive variance. Secondly, we benefited from existing ex situ experiments (progeny tests and conservation collection) installed with the same populations, thus allowing comparisons of in situ heritability estimates with more traditional methods. Heritability and evolvability estimates obtained with different methods varied substantially and showed large confidence intervals; however, we found that in situ were less precise than ex situ estimates, and assessments over two generations (with deeper relatedness) improved estimates of heritability while large sampling sizes are needed for accurate estimations. At the biological level, heritability values varied moderately across different ecological and functional categories of traits, and genetic correlations among traits were conserved over the two species. We identified limits for using realized genomic relatedness in natural stands to estimate the genetic variance, given the overall low variance of genetic relatedness and the rather low sampling sizes of currently used long-term genetic plots in forestry. These limits can be overcome if larger sample sizes are considered, or if the approach is extended over the next generation.

    ano.nymous@ccsd.cnrs.fr.invalid (Hermine Alexandre) 16 Sep 2024

    https://hal.inrae.fr/hal-03040730v1
  • [hal-03048253] Vegetation unit assignments: phytosociology experts and classification programs show similar performance but low convergence

    Aims: Assigning vegetation plots to vegetation units is a key step in biodiversity management projects. Nevertheless, the process of plot assignment to types is usually non-standardized, and assignment consistency remains poorly explored. To date, the efficiency of automatic classification programs has been assessed by comparing them with a unique expert judgment. Therefore, we investigated the consistency of five phytosociology expert judgments, and the consistency of these judgements with those of automatic classification programs. Location: Mainland France. Methods: We used 273 vegetation plots distributed across France and covering the diversity of the temperate and mountainous forest ecosystems of Western Europe. We asked a representative panel of five French organizations with recognized expertise in phytosociology to assign each plot to vegetation units. We provided a phytosociological classification including 228 associations, 43 alliances and eight classes. The assignments were compared among experts using an agreement ratio. We then compared the assignments suggested by three automatic classification programs with the expert judgments. Results: We observed small differences among the agreement ratios of the expert organizations; a given expert organization agreed with another one on association assignment one time in four on average, and one time in two on alliance assignment. The agreement ratios of the automatic classification programs were globally lower, but close to expert judgments. Conclusions: The results support the current trend toward unifying the existing classifications and specifying the assignment rules by creating guiding tools, which will decrease inter-observer variation. As compared to a pool of phytosociology experts, programs perform similarly to individual experts in vegetation unit assignment, especially at the alliance level. Although programs still need to be improved, these results pave the way for the creation of habitat time series crucial for the monitoring and conservation of biodiversity.

    ano.nymous@ccsd.cnrs.fr.invalid (Lise Maciejewski) 03 May 2022

    https://hal.science/hal-03048253v1
  • [hal-02989071] Gestion forestière intégrée des insectes ravageurs : exemple par l’étude de la niche écologique du hanneton forestier (Melolontha hippocastani Fabr. 1801)

    Depuis une dizaine d’années, nous observons une recrudescence de dégâts imputables au hanneton forestier (Melolontha hippocastani) dans différentes forêts françaises. Ils consomment les racines et causent la mort des semis et plants forestiers et sont suspectés d’être un facteur supplémentaire de dépérissement forestier. Dans ce cadre, trois études ont été mises en œuvre dans les forêts des Vosges du Nord, en 2014, 2018 et 2019. Cet article cherche à synthétiser les résultats obtenus. Il apparaît que les sols sableux sont les plus favorables à l’espèce. Par ailleurs, le couvert dense de la strate arbustive basse induit des effets négatifs sur la ponte des œufs. D’autre part, les peuplements mélangés (feuillus-résineux) à prépondérance de chênes sont les plus favorables à un grand nombre de pontes et de larves dans le sol. Enfin, l’ouverture de la cano- pée semble jouer un rôle positif sur le choix du lieu de ponte. Nous discutons en fin d’article sur les règles sylvicoles pouvant être préconisées.

    ano.nymous@ccsd.cnrs.fr.invalid (Jérémy Cours) 12 Aug 2021

    https://hal.science/hal-02989071v1
  • [hal-03038588] Evaluation de l’intérêt d’une préparation mécanisée, résultats d’un essai de semis artificiel de Pin sylvestre dans les Vosges.

    [...]

    ano.nymous@ccsd.cnrs.fr.invalid (Jonathan Pitaud) 03 Dec 2020

    https://hal.inrae.fr/hal-03038588v1
  • [hal-03048264] EUNIS Habitat Classification: Expert system, characteristic species combinations and distribution maps of European habitats

    Aim: The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation-plot records to the habitats of the EUNIS system, use it to classify a European vegetation-plot database, and compile statistically-derived characteristic species combinations and distribution maps for these habitats. Location: Europe. Methods: We developed the classification expert system EUNIS-ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each habitat was formally defined as a formula in a computer language combining algebraic and set-theoretic concepts with formal logical operators. We applied this expert system to classify 1,261,373 vegetation plots from the European Vegetation Archive (EVA) and other databases. Then we determined diagnostic, constant and dominant species for each habitat by calculating species-to-habitat fidelity and constancy (occurrence frequency) in the classified data set. Finally, we mapped the plot locations for each habitat. Results: Formal definitions were developed for 199 habitats at Level 3 of the EUNIS hierarchy, including 25 coastal, 18 wetland, 55 grassland, 43 shrubland, 46 forest and 12 man-made habitats. The expert system classified 1,125,121 vegetation plots to these habitat groups and 73,188 to other habitats, while 63,064 plots remained unclassified or were classified to more than one habitat. Data on each habitat were summarized in factsheets containing habitat description, distribution map, corresponding syntaxa and characteristic species combination. Conclusions: EUNIS habitats were characterized for the first time in terms of their species composition and distribution, based on a classification of a European database of vegetation plots using the newly developed electronic expert system EUNIS-ESy. The data provided and the expert system have considerable potential for future use in European nature conservation planning, monitoring and assessment.

    ano.nymous@ccsd.cnrs.fr.invalid (Milan Chytrý) 09 Dec 2020

    https://hal.science/hal-03048264v1
  • [hal-03045938] Natura 2000 forest habitats: climatic debt in lowlands and thermophilization in highlands

    Natura 2000 is a European network of sites dedicated to the conservation of vulnerable habitats. The definitions of Natura 2000 habitats are mainly based on plant communities. We investigated if the increase of the dominance of warm-adapted species observed in plant communities, described as thermophilization, had already led to measurable changes in Natura 2000 forest habitats. We created 5701 pairs of neighboring forest plots by gathering plots surveyed before 1987 and after 1997 to reflect historical and recent climatic conditions. A Natura 2000 habitat type was assigned to each vegetation plot using an automatic classification program. We calculated a temperature index that synthesized the temperature range of each habitat, and compared the habitat temperature indexes of the recent and historical plots of each pair. We highlighted a significant overall shift of 4.8% ± 1.78 (CI 95%) of the pairs toward warmer habitats over the studied period. While the shift was not significant in lowlands, 11.1% ± 3.0 (CI 95%) of the pairs evolved toward warmer habitats in highlands. The excess of pairs with a warmer habitat in the recent period was interpreted as thermophilization of Natura 2000 forest habitats. Therefore, global warming has been strong enough to induce actual changes at the coarse-grained habitat resolution specifically targeted by public policies. The absence of significant results in lowlands suggests the existence of unrealized potential habitat changes, which can be considered as a climatic debt. These results call for differential prioritization levels and implementations of public policies for nature conservation in lowlands and highlands.

    ano.nymous@ccsd.cnrs.fr.invalid (Lise Maciejewski) 21 Apr 2023

    https://hal.science/hal-03045938v1
  • [hal-02610246] Species mixing reduces drought susceptibility of Scots pine (Pinus sylvestris L.) and oak (Quercus robur L., Quercus petraea (Matt.) Liebl.) - Site water supply and fertility modify the mixing effect

    Tree species mixing has been widely promoted as a promising silvicultural tool for reducing drought stress. However, so far only a limited number of species combinations have been studied in detail, revealing inconsistent results. In this study, we analysed the effect of mixing Scots pine and oak (pedunculate oak and sessile oak) trees on their drought response along a comprehensive ecological gradient across Europe. The objective was to improve our knowledge of general drought response patterns of two fundamental European tree species in mixed versus monospecific stands. We focused on three null hypotheses: (HI) tree drought response does not differ between Scots pine and oak, (HII) tree drought response of Scots pine and oak is not affected by stand composition (mixture versus monoculture) and (HIII) tree drought response of Scots pine and oak in mixtures and monocultures is not modified by tree size or site conditions. To test the hypotheses, we analysed increment cores of Scots pine and oak, sampled in mixed and monospecific stands, covering a wide range of site conditions. We investigated resistance (the ability to maintain growth levels during drought), recovery (the ability to restore a level of growth after drought) and resilience (the capacity to recover to pre-drought growth levels), involving sitespecific drought events that occurred between 1976 and 2015. In monocultures, oak showed a higher resistance and resilience than Scots pine, while recovery was lower. Scots pine in mixed stands exhibited a higher resistance, but also a lower recovery compared with Scots pine in monocultures. Mixing increased the resistance and resilience of oak. Ecological factors such as tree size, site water supply and site fertility were found to have significant effects on the drought response. In the case of Scots pine, resistance was increased by tree size, while recovery was lowered. Resistance of oak increased with site water supply. The observed mixing effect on the tree drought response of Scots pine and oak was in some cases modified by the site conditions studied. Positive mixing effects in terms of resistance and resilience of oak increased with site water supply, while the opposite was found regarding recovery. In contrast, site fertility lessened the positive mixing effect on the resistance of Scots pine. We hypothesise that the observed positive mixing effects under drought mainly result from waterand/or light-related species interactions that improve resource availability and uptake according to temporal and spatial variations in environmental conditions.

    ano.nymous@ccsd.cnrs.fr.invalid (M. Steckel) 16 May 2020

    https://hal.inrae.fr/hal-02610246v1
  • [hal-02949790] A standard protocol for reporting species distribution models

    [...]

    ano.nymous@ccsd.cnrs.fr.invalid (Damaris Zurell) 12 Nov 2020

    https://hal.inrae.fr/hal-02949790v1
  • [hal-03317972] Ancient forest statistics provide centennial perspective over the status and dynamics of forest area in France

    Context: The history of European forest dynamic remains fragmental. In France, the Daubrée statistics (1908) and agricultural statistics (1892, 1929) formed fundamental material to fill this gap. Aims: Release, test, and summarize the digitalized dataset. Analyze long-term forest changes in forest area, composition, and structure. Methods: Primary data on forest area across NUTS-3 geographic units, split by forest management and ownership categories and dominating tree species (Daubrée), were digitized and cross-compared. Centennial changes in forest attributes were assessed from modern forest inventory data. Results: Cross-comparison revealed: (1) strong temporal consistency in forest changes over time, (2) systematic and interpretable biases in ownership/management categories between Daubrée and agricultural statistics. Strong shift from coppices to high forests, increased prevalence of private ownership, and constant proportion of broadleaf- and conifer-dominated forests were highlighted, with increased tree species diversity at country scale. Conclusion: Ancient statistics are shown to play a major role in retrospective land-use and forest policy analysis.

    ano.nymous@ccsd.cnrs.fr.invalid (Timothée Audinot) 09 Aug 2021

    https://hal.science/hal-03317972v1
  • [hal-03206201] Valuation de la ressource territoriale et formes de circularité : la labellisation dans la filière forêt-bois française (Alpes, Jura, Vosges)

    La multiplication des labels territoriaux dans le secteur forêt-bois semble s’inscrire en réponse aux pressions croissantes et combinées d’une économie mondialisée et aux exigences sociales et environnementales, conditions d’un développement durable. Partant des développements récents en économie territoriale, nous élargissons la question de la spécification de la ressource bois par l’analyse des modalités de sa valuation. À travers l’étude des démarches de labellisation dans les Alpes, les Vosges et le Jura, nous analysons les portefeuilles de valeur construits et mobilisés par le collectif et nous mettons en évidence les différentes formes de circularité qui y sont liées. Nous montrons que les labels bois se construisent de plus en plus surdes valeurs de territorialité, à travers l’activation de différentes formes de proximité. Encore très récentes, ces démarches s’instiguent en « contre-normes » et remettent en cause le modèle productif dominant sur la base d’alternatives territorialisées.

    ano.nymous@ccsd.cnrs.fr.invalid (Jonathan Lenglet) 23 Apr 2021

    https://agroparistech.hal.science/hal-03206201v1
  • [hal-02949021] Impacts of a partial rainfall exclusion in the field on growth and transpiration: consequences for leaf-level and whole-plant water-use efficiency compared to controlled conditions

    • Water use efficiency (WUE), oftentimes estimated as transpiration efficiency (TE): the amount of biomass produced with regard to the water used, has not yet been used as a breeding trait to select poplar genotypes with simultaneously high productivity and conservation of water. Before its application as a selection target, evidence must be presented showing that WUE or its estimators remain constant with age and across environmental conditions. • We conducted a rainfall exclusion experiment in the field on two Populus euramericana (Moench.) and two Populus nigra (L.) genotypes, and assessed leaf-level (A/g s) and whole-plant WUE (DMT/WU as well as their components and related traits. Then, we aimed to compare these results with the same poplar genotypes grown in a glasshouse under contrasting water availability. • Despite a reduction of soil water content and whole-plant transpiration, growth was stimulated in the rainfall exclusion plot, likely as a result of an increased nitrogen assimilation. However, TE values between the glasshouse and the field were similar, and genotype ranking remained fairly constant for transpiration, carbon isotopic discrimination (∆, as a proxy for Wi) and TE. Moreover, even though the drivers of WUE in both experiments were different, increases of WUE measured as ∆ or TE was not associated with lower biomass production. Relatively good agreement was found between ∆ and TE in the field, absence of a similar correlation in the glasshouse is discussed. • These results suggest that ∆ may be a good proxy for TE, and could be used, both as a breeding target for genotype selection in glasshouses without impacting biomass production when planted in the field. However, reduced water availability modified the genotype ranking more significantly than between the field/glasshouse experiments, suggesting a diversity of poplar response to drought that should be considered in breeding strategies. ABBREVIATIONS WUE water use efficiency Wi leaf intrinsic water use efficiency measured by leaf gas exchange (A/g s) TE whole-plant transpiration efficiency (biomass production over water used, DM T /WU) ∆ carbon isotope discrimination δ carbon isotope composition A net CO 2 assimilation C i internal CO 2 concentration g s stomatal conductance to water vapor WU whole plant water use E daily whole-plant transpiration per unit area VPD vapor pressure deficit Vc max maximum CO 2 carboxylation rate J max maximum photosynthetic electron flux A max net CO 2 assimilation measured under saturating atmospheric CO 2 concentration SWC soil water content Ψ p predawn leaf water potential H tree height https://doi.

    ano.nymous@ccsd.cnrs.fr.invalid (Maxime Durand) 21 Jul 2022

    https://hal.inrae.fr/hal-02949021v1
  • [hal-03035073] Le blaireau européen (Meles meles L.). Synthèse des connaissances européennes. Partie 2 : groupes familiaux, dynamiques des populations et domaines vitaux

    Cet article présente une synthèse des connaissances européennes sur les groupes familiaux, la dynamique des populations et les domaines vitaux. Le cycle de reproduction des blairelles est complexe avec un processus d’implantation différée des ovocytes. Le pic majeur de reproduction a lieu en hiver (janvier-février) après la mise bas des jeunes issus des accouplements précédents. Seulement environ 30 % des femelles se reproduisent tous les ans (femelles dominantes en bonne santé). Le nombre de blaireautins dans une portée varie en moyenne de 1 à 3 mais la mortalité avant un an est forte souvent autour de 50 %. En Europe, la densité moyenne des blaireaux est de 1,8 ± 2,3 individus (adultes et jeunes) au km2 (4,7 en considérant les fortes densités anglaises). Cependant, des densités nettement plus faibles de l’ordre de 1 blaireau par 10 km2 sont souvent observées en Europe de l’Est. La taille des groupes familiaux est de 3,8 ± 1,2 individus (avec 2,6 ± 1 adultes) avec des variations assez faibles entre les pays (4,6 ± 2,1 individus avec les données anglaises). Le domaine vital varie fortement selon le sexe et la saison. Il est plus grand pour les mâles. Il est minimal en hiver pour les deux sexes mais plus grand en été pour les femelles. Il varie également très fortement selon la densité des animaux au km2. Ainsi, les domaines vitaux les plus grands (> 500 ha) sont observés dans les zones de plus faibles densités d’animaux (1 à 2 individus aux 10 km2) sous climat contraignant et dans les contextes de moindres ressources alimentaires (Europe de l’Est et contexte méditerranéen). Dans les zones plus favorables en contexte océanique tempéré, le domaine vital est nettement plus petit (< 100 ha) avec des densités d’animaux souvent supérieurs à 2 ou 3 individus au km2.

    ano.nymous@ccsd.cnrs.fr.invalid (François Lebourgeois) 16 Dec 2020

    https://agroparistech.hal.science/hal-03035073v1
  • [hal-03046396] The potential impact of future climate on the distribution of European yew (Taxus baccata L.) in the Hyrcanian Forest region (Iran)

    The Hyrcanian Forest region is rich in relict species, and endemic and endangered species. Although there are concerns about climate change, its influence on tree species in the Hyrcanian forests in the north of Iran is still unidentified.Taxus baccatais among the few conifer species found in the region, and the present study aims to evaluate the potential impact of climate change on the distribution ofT. baccata. For this purpose, we used ensemble species distribution modeling with ten algorithms and based on two geographic extents (global and regional) and climate data for different climate change scenarios. For the regional extent, we calibrated the models in Hyrcanian forests including the three provinces in the north of Iran. For the global extent, we calibrated the models on the whole range distribution ofT. baccata. In both cases, we applied the models to predict the distribution ofT. baccatain northern Iran under current, 2050, and 2070 climates. In regional extent modeling, precipitation of coldest quarter and in global extent modeling temperature seasonality emerged as the most important variables. Present environmental suitability estimates indicated that the suitable area forT. baccatain Hyrcanian forests is 5.89 x 10(3) km(2)(regional modeling) to 9.74 x 10(3) km(2)(global modeling). The modeling suggests that climate change under representative concentration pathways (RCP) 8.5 is likely to lead to strong suitability reductions in the region, with just between 0.63 x 10(3) km(2)(regional modeling) and 0.57 x 10(3) km(2)(global modeling) suitable area in 2070. Hence,T. baccatarisks losing most currently suitable areas in the Hyrcanian forests under climate change. The results of the present study suggest there should be focus on conservation of areas predicted to remain suitable through near-future climate change and provide an estimate of the availability of suitable areas for the regeneration ofT. baccataand its use in reforestation.

    ano.nymous@ccsd.cnrs.fr.invalid (Kourosh Ahmadi) 08 Dec 2020

    https://hal.science/hal-03046396v1
  • [hal-03205381] Co‐designed management scenarios shape the responses of seasonally dry forests to changing climate and fire regimes

    Climate change is altering disturbance regimes and recovery rates of forests globally. The future of these forests will depend on how climate change interacts with management activities. Forest managers are in critical need of strategies to manage the effects of climate change. We co-designed forest management scenarios with forest managers and stakeholders in the Klamath ecoregion of Oregon and California, a seasonally dry forest in the Western US subject to fire disturbances. The resultant scenarios span a broad range of forest and fire management strategies. Using a mechanistic forest landscape model, we simulated the scenarios as they interacted with forest growth, succession, wildfire disturbances and climate change. We analysed the simulations to (a) understand how scenarios affected the fire regime and (b) estimate how each scenario altered potential forest composition. Within the simulation timeframe (85 years), the scenarios had a large influence on fire regimes, with fire rotation periods ranging from 60 years in a minimal management scenario to 180 years with an industrial forestry style management scenario. Regardless of management strategy, mega-fires (>100,000 ha) are expected to increase in frequency, driven by stronger climate forcing and extreme fire weather. High elevation conifers declined across all climate and management scenarios, reflecting an imbalance between forest types, climate and disturbance. At lower elevations (<1,800 m), most scenarios maintained forest cover levels; however, the minimal intervention scenario triggered 5 x 10(5) ha of mixed conifer loss by the end of the century in favour of shrublands, whereas the maximal intervention scenario added an equivalent amount of mixed conifer. Policy implications. Forest management scenarios that expand beyond current policies-including privatization and aggressive climate adaptation-can strongly influence forest trajectories despite a climate-enhanced fire regime. Forest management can alter forest trajectories by increasing the pace and scale of actions taken, such as fuel reduction treatments, or by limiting other actions, such as fire suppression.

    ano.nymous@ccsd.cnrs.fr.invalid (Charles Maxwell) 22 Apr 2021

    https://hal.inrae.fr/hal-03205381v1
  • [hal-03043589] Contrasting Dependencies of Photosynthetic Capacity on Leaf Nitrogen in Early- and Late-Successional Tropical Montane Tree Species

    Differences in photosynthetic capacity among tree species and tree functional types are currently assumed to be largely driven by variation in leaf nutrient content, particularly nitrogen (N). However, recent studies indicate that leaf N content is often a poor predictor of variation in photosynthetic capacity in tropical trees. In this study, we explored the relative importance of area-based total leaf N content (N tot) and within-leaf N allocation to photosynthetic capacity versus light-harvesting in controlling the variation in photosynthetic capacity (i.e. V cmax , J max) among mature trees of 12 species belonging to either early (ES) or late successional (LS) groups growing in a tropical montane rainforest in Rwanda, Central Africa. Photosynthetic capacity at a common leaf temperature of 25˚C (i.e. maximum rates of Rubisco carboxylation, V cmax25 and of electron transport, J max25) was higher in ES than in LS species (+ 58% and 68% for V cmax25 and J max25 , respectively). While N tot did not significantly differ between successional groups, the photosynthetic dependency on N tot was markedly different. In ES species, V cmax25 was strongly and positively related to N tot but this was not the case in LS species. However, there was no significant trade-off between relative leaf N investments in compounds maximizing photosynthetic capacity versus compounds maximizing light harvesting. Both leaf dark respiration at 25˚C (+ 33%) and, more surprisingly, apparent photosynthetic quantum yield (+ 35%) was higher in ES than in LS species. Moreover, R d25 was positively related to N tot for both ES and LS species. Our results imply that efforts to quantify carbon fluxes of tropical montane rainforests would be improved if they considered contrasting within-leaf N allocation and photosynthetic N tot dependencies between species with different successional strategies.

    ano.nymous@ccsd.cnrs.fr.invalid (Camille Ziegler) 07 Dec 2020

    https://hal.science/hal-03043589v1
  • [hal-04168537] Microgeographic adaptation and the effect of pollen flow on the adaptive potential of a temperate tree species

    In species with long-distance dispersal capacities and inhabiting a large ecological niche, local selection and gene flow are expected to be major evolutionary forces affecting the genetic adaptation of natural populations. Yet, in species such as trees, evidence of microgeographic adaptation and the quantitative assessment of the impact of gene flow on adaptive genetic variation are still limited. Here, we used extensive genetic and phenotypic data from European beech seedlings collected along an elevation gradient, and grown in a common garden, to study the signature of selection on the divergence of eleven potentially adaptive traits, and to assess the role of gene flow in resupplying adaptive genetic variation. We found a significant signal of adaptive differentiation among plots separated by < 1 km, with selection acting on growth and phenological traits. Consistent with theoretical expectations, our results suggest that pollen dispersal contributes to increase genetic diversity for these locally differentiated traits. Our results thus highlight that local selection is an important evolutionary force in natural tree populations and suggest that management interventions to facilitate movement of gametes along short ecological gradients would boost genetic diversity of individual tree populations, and enhance their adaptive potential to rapidly changing environments.

    ano.nymous@ccsd.cnrs.fr.invalid (Julie Gauzere) 21 Jul 2023

    https://hal.inrae.fr/hal-04168537v1
  • [hal-03085655] Unprecedented pluri-decennial increase in the growing stock of French forests is persistent and dominated by private broadleaved forests

    & Key message French forests exhibit the fastest relative changes across Europe. Growing stock increases faster than area, and is greatest in low-stocked private broadleaved forests. Past areal increases and current GS levels show positive effects on GS expansion, with GS increases hence expected to persist. & Context Strong increases in growing stocks (GS) of European forests for decades remain poorly understood and of unknown duration. French forests showing the greatest relative changes across Europe form the investigated case study. & Aims The magnitudes of net area, GS, and GS density (GSD) changes were evaluated across forest categories reflecting forest policy and land-use drivers. The roles of forest areal changes, GS and GSD levels on GS changes were investigated. & Methods National Forest Inventory data were used to produce time series of area, GS and GSD across forest categories over 1976–2014, and exploratory causal models of GS changes. & Results GS (+ 57%) increased three times faster than area, highlighting an advanced stage in the forest transition. Low-stocked private forests exhibited strong changes in GS/GSD, greatest in private broadleaved forests, stressing the contribution of returning forests on abandoned lands. Regression models demonstrated positive effects of both past areal increases and current GS, on GS expansion. & Conclusion Aerial C-sink in French forests is expected to persist in future decades.

    ano.nymous@ccsd.cnrs.fr.invalid (Jean-Daniel Bontemps) 21 Dec 2020

    https://hal.science/hal-03085655v1
  • [hal-02948747] Contrasting patterns of tree species mixture effects on wood δ13C along an environmental gradient

    Establishing mixed-species stands is frequently proposed as a strategy to adapt forests to the increasing risk of water scarcity, yet contrasted results have been reported regarding mixing effects on tree drought exposure. To investigate the drivers behind the spatial and temporal variation in water-related mixing effects, we analysed the delta C-13 variation in 22-year tree ring chronologies for beech and pine trees sampled from 17 pure and mixed pine-beech stands across a large gradient of environmental conditions throughout Europe. In the pure stands, average delta C-13 values were lower for beech (-27.9 parts per thousand to -22.2 parts per thousand) than for pine (-26.0 parts per thousand to -21.1 parts per thousand), irrespective of site conditions. Decreasing SPEI values (calculated over June to September) were associated with an increase in delta C-13 for both species, but their effect was influenced by stand basal area for pine and site water availability for beech. Mixing did not change the temporal constancy of delta C-13 nor the tree reaction to a drought event, for any of the species. While the mixing effect (Delta delta C-13 = delta C-13 pure stands - delta C-13 mixed stands) was on average positive for beech and non-significant for pine across the whole gradient, this effect strongly differed between sites. For both species, mixing was not significant at extremely dry sites and positive at dry sites; on moderately wet sites, mixing was positive for beech and negative for pine; at sites with permanent water supply, no general patterns emerge for any of the species. The pattern of mixing effect along the gradient of water availability was not linear but showed threshold points, highlighting the need to investigate such relation for other combinations of tree species.

    ano.nymous@ccsd.cnrs.fr.invalid (G. de Streel) 25 Oct 2023

    https://hal.inrae.fr/hal-02948747v1
  • [hal-02934348] Sacrificing growth and maintaining a dynamic carbohydrate storage are key processes for promoting beech survival under prolonged drought conditions

    Key message In case of a prolonged drought, the stored carbohydrates in trees were remobilized to fuel survival functions until their nearly depletion at death stage. Abstract Dynamic global vegetation models project forest tree mortality in response to the recurrent severe droughts likely in the future. However, these models should better take into account the physiological processes involved in tree mortality. Faced with severe drought, the Fagus sylvatica L. tree strongly limits its cambial growth. This suggests that readjustments in carbon (C) allocation among sink functions are taking place in response to the lack of water and this could allow tree's survival. For 3 years, we induced a water shortage on 8-year-old beech trees in a rain exclusion system. During this period, we analysed the consequences of severe drought on survival rate, growth, and non-structural carbohydrate (NSC) dynamics in the aboveground and belowground compartments of control, water-stressed living, and dead trees. The survival rate after 3 years of drought was 87%, while primary and secondary growth was strongly reduced. The first 2 years, NSC concentrations increased in all tree compartments (stem, branches, and roots) in response to drought. However, during the third year, starch dropped markedly in water-stressed trees, while soluble sugar concentrations remained similar to control trees. All the compartments in dead trees were virtually empty of starch and soluble sugars. Maintaining an active C storage function at the expense of growth was certainly key to F. sylvatica survival under prolonged extreme drought conditions. Process-based models predicting mortality should better take into account C storage and remobilization processes in forest trees.

    ano.nymous@ccsd.cnrs.fr.invalid (Pierre-Antoine Chuste) 09 Sep 2020

    https://hal.science/hal-02934348v1
  • [hal-02504844] Selective and taxon-dependent effects of semi-feral cattle grazing on tree regeneration in an old-growth Mediterranean mountain forest

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    ano.nymous@ccsd.cnrs.fr.invalid (Xavier Fortuny) 11 Mar 2020

    https://univ-lyon1.hal.science/hal-02504844v1