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[hal-02346487] Precipitation mediates sap flux sensitivity to evaporative demand in the neotropics
Transpiration in humid tropical forests modulates the global water cycle and is a key driver of climate regulation. Yet, our understanding of how tropical trees regulate sap flux in response to climate variability remains elusive. With a progressively warming climate, atmospheric evaporative demand [i.e., vapor pressure deficit (VPD)] will be increasingly important for plant functioning, becoming the major control of plant water use in the twenty-first century. Using measurements in 34 tree species at seven sites across a precipitation gradient in the neotropics, we determined how the maximum sap flux velocity (vmax) and the VPD threshold at which vmax is reached (VPDmax) vary with precipitation regime [mean annual precipitation (MAP); seasonal drought intensity (PDRY)] and two functional traits related to foliar and wood economics spectra [leaf mass per area (LMA); wood specific gravity (WSG)]. We show that, even though vmax is highly variable within sites, it follows a negative trend in response to increasing MAP and PDRY across sites. LMA and WSG exerted little effect on vmax and VPDmax, suggesting that these widely used functional traits provide limited explanatory power of dynamic plant responses to environmental variation within hyper-diverse forests. This study demonstrates that long-term precipitation plays an important role in the sap flux response of humid tropical forests to VPD. Our findings suggest that under higher evaporative demand, trees growing in wetter environments in humid tropical regions may be subjected to reduced water exchange with the atmosphere relative to trees growing in drier climates.
ano.nymous@ccsd.cnrs.fr.invalid (Charlotte Grossiord) 17 Aug 2024
https://hal.umontpellier.fr/hal-02346487v1
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[hal-02628795] Acclimation and adaptation components of the temperature dependence of plant photosynthesis at the global scale.
The temperature response of photosynthesis is one of the key factors determining predicted responses to warming in global vegetation models (GVMs). The response may vary geographically, owing to genetic adaptation to climate, and temporally, as a result of acclimation to changes in ambient temperature. Our goal was to develop a robust quantitative global model representing acclimation and adaptation of photosynthetic temperature responses. We quantified and modelled key mechanisms responsible for photosynthetic temperature acclimation and adaptation using a global dataset of photosynthetic CO2 response curves, including data from 141 C3 species from tropical rainforest to Arctic tundra. We separated temperature acclimation and adaptation processes by considering seasonal and common‐garden datasets, respectively. The observed global variation in the temperature optimum of photosynthesis was primarily explained by biochemical limitations to photosynthesis, rather than stomatal conductance or respiration. We found acclimation to growth temperature to be a stronger driver of this variation than adaptation to temperature at climate of origin. We developed a summary model to represent photosynthetic temperature responses and showed that it predicted the observed global variation in optimal temperatures with high accuracy. This novel algorithm should enable improved prediction of the function of global ecosystems in a warming climate.
ano.nymous@ccsd.cnrs.fr.invalid (Dushan P Kumarathunge) 27 May 2020
https://hal.inrae.fr/hal-02628795v1
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[hal-02372828] Soil N2O, CH4, and CO2 Fluxes in Forest, Grassland, and Tillage/No-Tillage Croplands in French Guiana (Amazonia)
The agricultural landscape of French Guiana (Amazonia) is expected to undergo substantial change as a result of rapid population growth in the region. Such changes in the landscape will lead to the conversion of tropical forests into land destined for agricultural use. Little information is available on the effect of different agricultural systems on greenhouse gas (GHG) emissions in French Guiana. For our experiment, two hectares of forest were cleared, without the use of fire, at the Combi experimental site (sandy-clayey Ferralsol) at the end of 2008. After one year with legume and grass cover, the site was modified to include the following three fertilized agricultural systems: (1) Grassland (Brachiaria ruziziensis, mowed), (2) cropland (maize/soybean rotation) with disc tillage, and (3) cropland (maize/soybean rotation) with no-tillage in direct seeding. Soil N2O, CH4, and CO2 fluxes were measured with dark chambers from May 2011 to November 2014. Our results show that grassland was a significantly lower emitter of N2O but a significantly higher emitter of CH4 compared to the two cropland systems studied. We did not observe significant differences between the two cropland systems for N2O and CH4 fluxes. Measurements of the net ecosystem CO2 exchange would be useful to better compare the role of different agricultural systems as a source of GHGs.
ano.nymous@ccsd.cnrs.fr.invalid (Caroline Petitjean) 26 May 2020
https://agroparistech.hal.science/hal-02372828v1
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[hal-02118719] The influence of veneer thickness and knot proportion on the mechanical properties of laminated veneer lumber (LVL) made from secondary quality hardwood
The first objective of this work was to study the influence of veneer quality on the mechanical properties of laminated veneer lumber (LVL) made of secondary quality hardwood. The second objective was to propose an adapted veneer thickness that provides the optimum mechanical properties of LVL, taking the veneer properties into account. Forty-eight LVL panels glued together using polyvinyl acetate (PVAc) were prepared. The quality of fresh veneers was assessed by measuring veneer knot proportion, lathe check depth and lathe check interval. The static modulus of elasticity (MOE), dynamic MOE, modulus of rupture (MOR) and shear modulus were measured using destructive and non-destructive methods. The 3 mm thick veneer provided the optimum mechanical properties for LVL for both species. The test direction did not have any significant influence on the mechanical properties. In the flatwise direction, the average MOE values obtained were 13.2 GPa for beech LVL and 13.3 GPa for oak LVL, whereas the MOR was 72.0 MPa and 63.4 MPa, respectively. Increasing knot proportion in veneers results in a decrease in LVL MOE and MOR. Moreover, deeper lathe checks and higher lathe check intervals on veneer surfaces provide lower LVL shear modulus in the edgewise direction for both species. Internal veneer provides LVL with a higher density but weaker mechanical properties due to a higher knot proportion in the internal veneer.
ano.nymous@ccsd.cnrs.fr.invalid (Citra Yanto Ciki Purba) 03 May 2019
https://hal.science/hal-02118719v1
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[hal-02629130] Identifying the tree species compositions that maximize ecosystem functioning in European forests
1. Forest ecosystem functioning generally benefits from higher tree species richness, but variation within richness levels is typically large. This is mostly due to the contrasting performances of communities with different compositions. Evidencebased understanding of composition effects on forest productivity, as well as on multiple other functions will enable forest managers to focus on the selection of species that maximize functioning, rather than on diversity per se. 2. We used a dataset of 30 ecosystem functions measured in stands with different species richness and composition in six European forest types. First, we quantified whether the compositions that maximize annual above-ground wood production (productivity) generally also fulfil the multiple other ecosystem functions (multifunctionality). Then, we quantified the species identity effects and strength of interspecific interactions to identify the “best” and “worst” species composition for multifunctionality. Finally, we evaluated the real-world frequency of occurrence of best and worst mixtures, using harmonized data from multiple national forest inventories. 3. The most productive tree species combinations also tended to express relatively high multifunctionality, although we found a relatively wide range of compositions with high- or low-average multifunctionality for the same level of productivity. Monocultures were distributed among the highest as well as the lowest performing compositions. The variation in functioning between compositions was generally driven by differences in the performance of the component species and, to a lesser extent, by particular interspecific interactions. Finally, we found that the most frequent species compositions in inventory data were monospecific stands and that the most common compositions showed below-average multifunctionality and productivity. 4. Synthesis and applications. Species identity and composition effects are essential to the development of high-performing production systems, for instance in forestry and agriculture. They therefore deserve great attention in the analysis and design of functional biodiversity studies if the aim is to inform ecosystem management. A management focus on tree productivity does not necessarily trade-off against other ecosystem functions; high productivity and multifunctionality can be combined with an informed selection of tree species and species combinations.
ano.nymous@ccsd.cnrs.fr.invalid (Lander Baeten) 29 Dec 2024
https://hal.inrae.fr/hal-02629130v1
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[hal-02626083] Genetic differentiation in functional traits among European sessile oak populations
The vulnerability of forest species and tree populations to climate change is related to the exposure of the ecosystem to extreme climatic conditions and to the adaptive capacity of the population to cope with those conditions. Adaptive capacity is a relatively under-researched topic within the forest science community and there is an urgent need to understand to what extent particular combinations of traits have been shaped by natural selection under climatic gradients, potentially resulting in adaptive multi-trait associations. Thus, our aim was to quantify genetic variation in several leaf and woody traits that may contribute to multi-trait associations in which intraspecific variation could represent a source for species adaptation to climate change. A multi-trait approach was performed using nine Quercus petraea provenances originating from different locations that cover most of the species' distribution range over Europe and that were grown in a common garden. Multiple adaptive differences were observed between oak provenances but also some evolutionary stasis. Also, our results revealed higher genetic differentiation in traits related to phenology and growth than in those related to xylem anatomy, physiology and hydraulics for which no genetic differentiation was observed. The multiple associations between those traits and climate variables resulting from multivariate and path analyses suggest a multi-trait association largely involving phenological and growth traits for Quercus petraea. © The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.
ano.nymous@ccsd.cnrs.fr.invalid (Jose Manuel Torres Ruiz) 26 May 2020
https://hal.inrae.fr/hal-02626083v1
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[hal-02621961] Améliorer la qualité des plants et leur taux de reprise
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ano.nymous@ccsd.cnrs.fr.invalid (Nathalie Ollat) 26 May 2020
https://hal.inrae.fr/hal-02621961v1
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[hal-02624570] Antioxidative responses of three oak species under ozone and water stress conditions
Plants are frequently exposed to adverse environmental conditions such as drought and ozone (O-3). Under these conditions, plants can survive due to their ability to adjust their metabolism. The aim of the present study was to compare the detoxification mechanisms of three oak species showing different O-3 sensitivity and water use strategy. Two-year-old seedlings of Quercus ilex, Q. pubescens and Q. robur were grown under the combination of three levels of O-3 (1.0, 1.2 and 1.4 times the ambient O-3 concentration) and three levels of water availability (on average 100, 80 and 42% of field capacity i.e. well-watered, moderate drought and severe drought, respectively) in an O-3 Free Air Controlled Exposure facility. Ozone and drought induced the accumulation of reactive oxygen species (ROS) and this phenomenon was species-specific. Sometimes, ROS accumulation was not associated with membrane injury suggesting that several antioxidative defence mechanisms inhibited or alleviated the oxidative damage. Both O-3 and drought increased total carotenoids that were able to prevent the peroxidation action by free radicals in Q. ilex, as confirmed by unchanged malondialdehyde by-product values. The concomitant decrease of total flavonoids may be related to the consumption of these compounds by the cell to inhibit the accumulation of hydrogen peroxide. Unchanged total phenols confirmed that Q. ilex has a superior ability to counteract oxidative conditions. Similar responses were found in Q. pubescens, although the negative impact of both factors was less efficiently faced than in the sympatric Q. ilex. In Q. robur, high O-3 concentrations and severe drought induced a partial rearrangement of the phenylpropanoid pathways. These antioxidative mechanisms were not able to protect the cell structure (as confirmed by ROS accumulation) suggesting that Q. robur showed a lower degree of tolerance than the other two species.
ano.nymous@ccsd.cnrs.fr.invalid (Elisa Pellegrini) 26 May 2020
https://hal.inrae.fr/hal-02624570v1
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[hal-02184243] Geographical adaptation prevails over species-specific determinism in trees' vulnerability to climate change at Mediterranean rear-edge forests
Climate change may reduce forest growth and increase forest mortality, which is connected to high carbon costs through reductions in gross primary production and net ecosystem exchange. Yet, the spatiotemporal patterns of vulnerability to both short-term extreme events and gradual environmental changes are quite uncertain across the species' limits of tolerance to dryness. Such information is fundamental for defining ecologically relevant upper limits of species tolerance to drought and, hence, to predict the risk of increased forest mortality and shifts in species composition. We investigate here to what extent the impact of short- and long-term environmental changes determines vulnerability to climate change of three evergreen conifers (Scots pine, silver fir, Norway spruce) and two deciduous hardwoods (European beech, sessile oak) tree species at their southernmost limits of distribution in the Mediterranean Basin. Finally, we simulated future forest growth under RCP 2.6 and 8.5 emission scenarios using a multispecies generalized linear mixed model. Our analysis provides four key insights into the patterns of species' vulnerability to climate change. First, site climatic marginality was significantly linked to the growth trends: increasing growth was related to less climatically limited sites. Second, estimated species-specific vulnerability did not match their a priori rank in drought tolerance: Scots pine and beech seem to be the most vulnerable species among those studied despite their contrasting physiologies. Third, adaptation to site conditions prevails over species-specific determinism in forest response to climate change. And fourth, regional differences in forests vulnerability to climate change across the Mediterranean Basin are linked to the influence of summer atmospheric circulation patterns, which are not correctly represented in global climate models. Thus, projections of forest performance should reconsider the traditional classification of tree species in functional types and critically evaluate the fine-scale limitations of the climate data generated by global climate models.
ano.nymous@ccsd.cnrs.fr.invalid (Isabel Dorado-Liñán) 15 Jul 2019
https://hal.science/hal-02184243v1
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[hal-02356964] Alpha diversity of vascular plants in European forests
Aim. The former continental‐scale studies modelled coarse‐grained plant species‐richness patterns (gamma diversity). Here we aim to refine this information for European forests by (a) modelling the number of vascular plant species that co‐occur in local communities (alpha diversity) within spatial units of 400 m2; and (b) assessing the factors likely determining the observed spatial patterns in alpha diversity. Location. Europe roughly within 12°W–30°E and 35–60°N. Taxon. Vascular plants. Methods. The numbers of co‐occurring vascular plant species were counted in 73,134 georeferenced vegetation plots. Each plot was classified by an expert system into deciduous broadleaf, coniferous or sclerophyllous forest. Random Forest models were used to map and explain spatial patterns in alpha diversity for each forest type separately using 19 environmental, land‐use and historical variables. Results. Our models explained from 51.0% to 70.9% of the variation in forest alpha diversity. The modelled alpha‐diversity pattern was dominated by a marked gradient from species‐poor north‐western to species‐rich south‐eastern Europe. The most prominent richness hotspots were identified in the Calcareous Alps and adjacent north‐western Dinarides, the Carpathian foothills in Romania and the Western Carpathians in Slovakia. Energy‐related factors, bedrock types and terrain ruggedness were identified as the main variables underlying the observed richness patterns. Alpha diversity increases especially with temperature seasonality in deciduous broadleaf forests, on limestone bedrock in coniferous forests and in areas with low annual actual evapotranspiration in sclerophyllous forests. Main conclusions. We provide the first predictive maps and analyses of environmental factors driving the alpha diversity of vascular plants across European forests. Such information is important for the general understanding of European biodiversity. This study also demonstrates a high potential of vegetation‐plot databases as sources for robust estimation of the number of vascular plant species that co‐occur at fine spatial grains across large areas.
ano.nymous@ccsd.cnrs.fr.invalid (Martin Večeřa) 18 Nov 2019
https://hal.science/hal-02356964v1
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[hal-02628122] Size-density trajectories for even-aged sessile oak (Quercus petraea (Matt.) Liebl.) and common beech (Fagus sylvatica L.) stands revealing similarities and differences in the mortality process
Key message We studied the size-density trajectories of pure even-aged unthinned experimental sessile oak ( Quercus petraea (Matt.) Liebl.) stands in the ranges of 994–135,555 trees per hectare initial densities, observed from the ages of 5 to 38. We compared them to unthinned beech ( Fagus sylvatica L.) stands from the same experimental area. An original piecewise polynomial function was fitted to the trajectories, giving way to various applications. For each species, the initial number of trees per hectare ( N 0 ) and the mean girth at breast height at the onset of mortality (Cg 0 ) were parameters of the trajectory model, in addition to the parameters of the maximum size-density lines. The two former parameters (Cg 0, N 0 ) were tied by a linear relationship, which allowed the prediction of trajectories for initial densities not included in the study data. For oak and beech, mortality onset occurred at a constant relative density (RDI), for all initial stand densities, respectively, 0.35 and 0.29. The comparison of the size-density trajectories of oak and beech allowed to establish that oak needs more space than beech for comparable mean girth, and then is less efficient than beech in its space requirements. Context This paper models the size-density trajectories of pure even-aged sessile oak stands, including the early development stage. It compares the oak results with those on common beech on the same site from a previous study. Aims A novel approach to size-density trajectories, with an original polynomial piecewise function previously used for beech stands on the same site, was satisfactorily used again as a mortality model to provide references to managers of oak forests. Material and methods A 38-year-old oak spacing trial, re-measured from year 5 to year 38, provided the opportunity to study the size-density trajectories of unthinned stands of this species. Results The fit of the piecewise polynomial function allowed us to estimate the parameters of the size-density trajectories of all stands, which were the initial number of trees per hectare (N0) and the mean girth at breast height at the onset of mortality (Cg0), in addition to the intercept (a) and slope (b) of the maximum size-density line. A linear relationship between Ln(N0) and Ln(Cg0) (where Ln is the Neperian logarithm) allowed us to reduce the number of parameters needed to fit the trajectories and made it possible to predict a size-density trajectory from any initial density not observed in the experimental stands. Moreover, this later line appeared to be parallel to the maximum size-density line, and new data allowed to establish that this was also the case for the beech stands on the same site. This parallelism feature translates to the onset of mortality occurring at the same relative density for stands of every initial density that is 0.35 for oak and 0.29 for beech. Conclusion Given the parameters of the maximum size-density line, a single-parameter function family could be used to predict the size-density trajectories of oak stands. The predicted trajectories have various applications in oak silviculture and growth simulators. The oak data and new data for beech stands on the same site allowed to compare the two species and draw conclusions on similitudes and differences concerning mortality and space requirements of both species.
ano.nymous@ccsd.cnrs.fr.invalid (Francois Ningre) 27 May 2020
https://hal.inrae.fr/hal-02628122v1
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[hal-02627538] Maintenance of long-term experiments for unique insights into forest growth dynamics and trends: review and perspectives
In this review, the unique features and facts of long-term experiments are presented. Long-term experimental plots provide information of forest stand dynamics which cannot be derived from forest inventories or small temporary plots. Most comprise unthinned plots which represent the site specific maximum stand density as an unambiguous reference. By measuring the remaining as well as the removed stand, the survey of long-term experiments provides the total production at a given site, which is most relevant for examining the relationship between site conditions and stand productivity on the one hand and between stand density and productivity on the other. Thus, long-term experiments can reveal the site-specific effect of thinning and species mixing on stand structure, production and carbon sequestration. If they cover an entire rotation or even the previous and following generation on a given site, they reveal a species' long-term behaviour and any growth trends caused by environmental changes. Second, we exploit the unique data of European long-term experiments, some of which have been surveyed since 1848. We show the long-term effect of different density regimes on stand dynamics and an essential trade-off between total stand volume production and mean tree size. Long-term experiments reveal that tree species mixing can significantly increase stand density and productivity compared with monospecific stands. Thanks to surveys spanning decades or even a century, we can show the changing long-term-performance of different provenances and acceleration of stand production caused by environmental change, as well as better understand the growth dynamics of natural forests. Without long-term experiments forest science and practice would be not in a position to obtain such findings which are of the utmost relevance for science and practice. Third, we draw conclusions and show perspectives regarding the maintenance and further development of long-term experiments. It would require another 150years to build up a comparable wealth of scientific information, practical knowledge, and teaching and training model examples. Although tempting, long-term experiments should not be sacrificed for cost-cutting measures. Given the global environmental change and the resulting challenges for sustainable management, the network of long-term experiments should rather be extended regarding experimental factors, recorded variables and inter- and transdisciplinary use for science and practice.
ano.nymous@ccsd.cnrs.fr.invalid (Hans Pretzsch) 26 May 2020
https://hal.inrae.fr/hal-02627538v1
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[hal-02184245] Time shifts in height and diameter growth allocation in understory European beech (Fagus sylvatica L.) following canopy release
Understory trees experience a succession of canopy opening and closure events during their lifetime. Preferential allocation of their biomass to height or diameter growth is part of the acclimation process to their immediate environment. In this study, we investigated annual height and diameter increments in Fagus sylvatica understory trees submitted to canopy release. Annual height and diameter increments were obtained from retrospective stem analysis from the top of the tree to the stump on 39 understory trees. The relationship between height and diameter increments was investigated and temporal correlations among successive annual height and diameter increments were analyzed. An asymptotic relationship between annual height and diameter increment indicates that stem height growth was limited in understory trees. The intercept significantly differed from zero suggesting that height growth never stopped even when diameter growth was null. Following canopy release events, immediate diameter growth increase was observed while the height growth response was delayed, resulting in a time shift in the growth allocation strategy. Strong and asymmetric temporal correlations between annual height and diameter increments were observed: past annual diameter growth was positively correlated to present height growth. In understory trees, tree height is the main factor determining their potential growth since it determines their access to above-canopy light. However, the precedence of diameter growth over height growth suggests that tree growth is driven by diameter instead of height. This apparent discrepancy may be explained by the fact that, under closed canopy conditions, stem allometry reaches a functional threshold that forces tree to grow in diameter before growing in height.
ano.nymous@ccsd.cnrs.fr.invalid (Estelle Noyer) 15 Jul 2019
https://hal.science/hal-02184245v1
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[hal-02628125] Are mixed-tree plantations including a nitrogen-fixing species more productive than monocultures?
The inclusion of N2-fixing tree species in tree plantations has the potential to increase biomass production compared to monocultures. Both successes and failures have been described in the literature; however, it is still difficult to distinguish a general pattern and to disentangle the factors influencing the mixture effect. The first objective of this study was to provide an overview of the published data on the effect of the introduction of N2-fixing trees in tree plantations through a meta-analysis approach and to calculate a mean effect of mixed-tree plantations on biomass production compared to monocultures of the non N2-fixing species in stands 2–20 years of age. The second objective was to evaluate the effects of (1) climate zone (temperate vs. tropical), (2) the species used (eucalypts vs. other non N2-fixing species, and leguminous tree species vs. other N2-fixing species), (3) the proportion of N2-fixing species compared to the non-fixing species, and (4) plant developmental stage. A total of 148 case studies from 34 experimental plantations under tropical (68 case studies) and temperate (80 case studies) conditions were identified from the literature. The global mixture effect was significantly positive, mixed-tree plantations being 18% more productive than the non N2-fixing monocultures, and this effect was significantly different from zero under temperate conditions (24% more productive) but not under tropical conditions (12% more productive). Indeed, the sites where the positive mixture effect was significantly different from zero were mostly located in a temperate climate, where soil nitrogen is generally considered less available than in tropical latitudes. Intermediate and high proportions of N2-fixing species gave similar positive results (27% more productive), while low proportions had no significant impact. Neither plantation age nor type of N2-fixing species (legume trees vs. other N2-fixing species) had any significant effect. In conclusion, it appears that climate is the main factor influencing the success of the mixture; however, it also seems that the degree of mixture success is more marked on sites with low biomass production where the monoculture is the least productive.
ano.nymous@ccsd.cnrs.fr.invalid (Nicolas Marron) 22 Oct 2021
https://hal.inrae.fr/hal-02628125v1
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[hal-01938609] Impact of vegetation on the methane budget of a temperate forest
Upland forest soils are known to be the main biological sink for methane, but studies have shown that net methane uptake of a forest ecosystem can be reduced when methane emissions by vegetation are considered. We estimated the methane budget of a young oak plantation by considering tree stems but also the understorey vegetation. Automated chambers connected to a laser‐based gas analyser, on tree stems, bare soil and soil covered with understorey vegetation, recorded CH4 fluxes for 7 months at 3 h intervals. Tree stem emissions were low and equated to only 0.1% of the soil sink. Conversely, the presence of understorey vegetation increased soil methane uptake. This plant‐driven enhancement of CH4 uptake occurred when the soil was consuming methane. At the stand level, the methane budget shifted from −1.4 ± 0.4 kg C ha−1 when we upscaled data obtained only on bare soil, to −2.9 ± 0.6 kg C ha−1 when we considered soil area that was covered with understorey vegetation. These results indicate that aerenchymatous plant species, which are known to reduce the methane sink in wetlands, actually increase soil methane uptake two‐fold in an upland forest by enhancing methane and oxygen transport and/or by promoting growth of methanotrophic populations.
ano.nymous@ccsd.cnrs.fr.invalid (Caroline C. Plain) 28 Nov 2018
https://hal.univ-lorraine.fr/hal-01938609v1
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[hal-01972724] Influence of annual climatic variations, climate changes, and sociological factors on the production of the Périgord black truffle (Tuber melanosporum Vittad.) from 1903–1904 to 1988–1989 in the Vaucluse (France)
From 1903–1904 to 1988–1989, the two World Wars and sociological factors as rural desertification and changes in land uses mainly explained the decline of black truffle production in the Vaucluse department, which well reflects that of the whole of France. These can be correlated with the annual climatic variations as well as, from 1924–1925 to 1948–1949, the raw production rates of the managed truffle orchard of Pernes-les-Fontaines located in Vaucluse. The two methods used (correlation coefficients and Bayesian functional linear regression with Sparse Step functions) gave consistent results: the main factor explaining the annual variations of truffle production was the summer climatic water deficit of the year n. A general model including the rural exodus and the cumulated climatic water deficit of summer months both allowed to well explain the evolution of truffle production from 1903–1904 to 1988–1989 in the Vaucluse and its huge decrease. During that period, global warming had little effect. However, in the twenty-first century, all the scenarios predict increased summer water stress for the Mediterranean region, which could greatly affect black truffle production.
ano.nymous@ccsd.cnrs.fr.invalid (Meïli Baragatti) 07 Jan 2019
https://hal.science/hal-01972724v1
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[hal-02624170] Tree aging does not affect the ranking for water use efficiency recorded from δ13C in three Populus deltoides × P. nigra genotypes
A large variability of water use efficiency (assessed from the carbon isotopic discrimination in leaves and leaf soluble sugars) has been detected among poplar genotypes. Checking whether such differences detected in young trees (1-2 years old) remain stable with tree age is a prerequisite to use this trait with confidence for breeding purposes. In this study, a synchronic approach was used to test the age-related stability of the genotypic ranking of carbon isotopic discrimination in wood (Δ13C) until tree maturity. We sampled 376 trees between 4 and 20 years from three Populus deltoides × P. nigra genotypes growing in 41 common-garden trials across France. Carbon and nitrogen percentages along with δ13C was measured in the bulk wood of the year 2009 and used to compute the Δ13C. Basal area increment between 2008 and 2009 was also measured. Results showed that Δ13C increased (i.e., water use efficiency decreased) between ages 4 to 6 and remained stable later on. Significant differences among genotypes were found but the ranking among genotypes remained stable with age during the assessed life span. Furthermore, basal area increment and Δ13C were positively correlated interannually. This large-scale survey shows that despite crossing over in the temporal trend, water use efficiency remained stable with age across 3 poplar genotypes. However, further studies with a large number of genotypes are required to confirm whether this trait can be used to maintain or even improve productivity of poplar plantations, while lowering water consumption.
ano.nymous@ccsd.cnrs.fr.invalid (Fahad Rasheed) 26 May 2020
https://hal.inrae.fr/hal-02624170v1
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[hal-02265924] Altered stomatal dynamics of two Euramerican poplar genotypes submitted to successive ozone exposure and water deficit
The impact of ozone (O3) pollution events on the plant drought response needs special attention because spring O3 episodes are often followed by summer drought. By causing stomatal sluggishness, O3 could affect the stomatal dynamic during a subsequent drought event. In this context, we studied the impact of O3 exposure and water deficit (in the presence or in the absence of O3 episode) on the stomatal closure/opening mechanisms relative to irradiance or vapour pressure deficit (VPD) variation. Two genotypes of Populus nigra x deltoides were exposed to various treatments for 21 days. Saplings were exposed to 80 ppb/day O3 for 13 days, and then to moderate drought for 7 days. The curves of the stomatal response to irradiance and VPD changes were determined after 13 days of O3 exposure, and after 21 days in the case of subsequent water deficit, and then fitted using a sigmoidal model. The main responses under O3 exposure were stomatal closure and sluggishness, but the two genotypes showed contrasting responses. During stomatal closure induced by a change in irradiance, closure was slower for both genotypes. Nonetheless, the genotypes differed in stomatal opening under light. Carpaccio stomata opened more slowly than control stomata, whereas Robusta stomata tended to open faster. These effects could be of particular interest, as stomatal impairment was still present after O3 exposure and could result from imperfect recovery. Under water deficit alone, we observed slower stomatal closure in response to VPD and irradiance, but faster stomatal opening in response to irradiance, more marked in Carpaccio. Under the combined treatment, most of the parameters showed antagonistic responses. Our results highlight that it is important to take genotype-specific responses and interactive stress cross-talk into account to improve the prediction of stomatal conductance in response to various environmental modifications.
ano.nymous@ccsd.cnrs.fr.invalid (Nicolas Dusart) 25 Oct 2021
https://hal.science/hal-02265924v1
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[hal-02352487] Element content and expression of genes of interest in guard cells are connected to spatiotemporal variations in stomatal conductance
Element content and expression of genes of interest on single cell types, such as stomata, provide valuable insights into their specific physiology, improving our understanding of leaf gas exchange regulation. We investigated how far differences in stomatal conductance (g(s)) can be ascribed to changes in guard cells functioning in amphistomateous leaves. g(s) was measured during the day on both leaf sides, on well-watered and drought-stressed trees (two Populus euramericana Moench and two Populus nigra L. genotypes). In parallel, guard cells were dissected for element content and gene expressions analyses. Both were strongly arranged according to genotype, and drought had the lowest impact overall. Normalizing the data by genotype highlighted a structure on the basis of leaf sides and time of day both for element content and gene expression. Guard cells magnesium, phosphorus, and chlorine were the most abundant on the abaxial side in the morning, where g(s) was at the highest. In contrast, genes encoding H+-ATPase and aquaporins were usually more abundant in the afternoon, whereas genes encoding Ca2+-vacuolar antiporters, K+ channels, and ABA-related genes were in general more abundant on the adaxial side. Our work highlights the unique physiology of each leaf side and their analogous rhythmicity through the day.
ano.nymous@ccsd.cnrs.fr.invalid (Maxime Durand) 06 Nov 2019
https://hal.science/hal-02352487v1
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[hal-02264373] Additive effects of high growth rate and low transpiration rate drive differences in whole plant transpiration efficiency among black poplar genotypes
Poplar plantations, widely used for the production of woody biomass, might be at high risk from the climate change-induced increase in the frequency of drought periods. Therefore, selecting improved genotypes, which are highly productive but with a high water use efficiency (WUE), is becoming a major target. The use of automated weighing systems in controlled environments facilitates the estimation of cumulated water loss and whole plant transpiration efficiency (TE). Differences in TE and leaf level intrinsic WUE as well as the contribution of underlying ecophysiological traits were determined in three contrasting P. nigra genotypes. Strong differences in TE among the selected genotypes were congruent with differences in leaf level intrinsic WUE. Our data show that a high total leaf area was overcompensated by a low per leaf area transpiration rate, leading to higher TE in highly productive genotypes originating from cool locations. Nocturnal water loss was relatively low but contributed to variations in TE among genotypes. In response to drought, leaf level WUE increased but not TE, suggesting that carbon losses due to whole plant respiration could offset the drought-induced increase in intrinsic WUE.
ano.nymous@ccsd.cnrs.fr.invalid (Marie-Béatrice Bogeat-Triboulot) 06 Aug 2019
https://hal.science/hal-02264373v1
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[hal-02623598] Altered stomatal dynamics induced by changes in irradiance and vapour-pressure deficit under drought: impacts on the whole-plant transpiration efficiency of poplar genotypes
Recent findings were able to show significant variability of stomatal dynamics between species, but not much is known about factors influencing stomatal dynamics and its consequences on biomass production, transpiration and water-use efficiency (WUE). We assessed the dynamics of stomatal conductance (g(s)) to a change of irradiance or vapour-pressure deficit (VPD) in two Populus euramericana and two Populus nigra genotypes grown under control and drought conditions. Our objectives were to determine the diversity of stomatal dynamics among poplar genotypes, and if soil water deficit can alter it. Physiological and morphological factors were investigated to find their potential links with stomatal morphology, WUE and its components at the whole-plant level. We found significant genotypic variability of g(s) dynamics to both irradiance and VPD. Genotypes with faster stomatal dynamics were correlated with higher stomatal density and smaller stomata, and the implications of these correlations are discussed. Drought slowed g(s) dynamics, depending on genotype and especially during stomatal closing. This finding is contrary to previous research on more drought-tolerant species. Independently of the treatment, faster stomatal dynamics were negatively correlated with daily whole-plant transpiration, presenting new evidence of a previously hypothesized contribution of stomatal dynamics to whole-plant water use.
ano.nymous@ccsd.cnrs.fr.invalid (Maxime Durand) 26 May 2020
https://hal.inrae.fr/hal-02623598v1
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[hal-02399726] The cost of deer to trees: changes in resource allocation from growth-related traits and phenolic content to structural defence
Background and aims-Plants may use various defence mechanisms to protect their tissues against deer browsing and the allocation of resources to defence may trade-off with plants' growth. In a context of increasing deer populations in European forests, understanding the resource allocation strategies of trees is critical to better assess their ability to face an increasing browsing pressure. The aim of this study was to determine how deer removal affects the resource allocation to both defensive and growth-related traits in field conditions for three tree species (Abies alba, Picea abies and Fagus sylvatica). Methods-We compared eight pairs of fenced-unfenced plots to contrast plots with and without browsing pressure. The pairs were set up in 2005 and 2014 to compare different fencing duration. We measured leaf and shoot traits related to the defence against herbivores (phenolic content, structural resistance, C:N ratio) and to the investment in plants' growth and productivity (specific leaf area and nutrient content). Key results-For the three species, the structural resistance of leaves and shoots was negatively correlated with SLA, nutrient content and phenolic content. For Abies alba, exclusion of deer decreased shoot structural resistance in favour of higher nutrient content, SLA and phenolic content. The fencing duration had no effect on the different measured traits. Conclusions-Our results support the assumption of a trade-off between structural defence and growth-related traits at the intraspecific scale for the three studied species. We also confirmed the hypothesis that exposure to deer browsing is involved in the resource allocation of woody species. For Abies alba, fencing led to a change in resource allocation from structural defence to growth-related traits and chemical defence.
ano.nymous@ccsd.cnrs.fr.invalid (Julien Barrere) 09 Dec 2019
https://hal.science/hal-02399726v1
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[hal-02154447] First evidences that the ectomycorrhizal fungus Paxillus involutus mobilizes nitrogen and carbon from saprotrophic fungus necromass
Fungal succession in rotting wood shows a surprising abundance of ectomycorrhizal (EM) fungi during the late decomposition stages. To better understand the links between EM fungi and saprotrophic fungi, we investigated the potential capacities of the EM fungus Paxillus involutus to mobilize nutrients from necromass of Postia placenta, a wood rot fungus, and to transfer these elements to its host tree. In this aim, we used pure cultures of P. involutus in the presence of labelled Postia necromass (15N/13C) as nutrient source, and a monoxenic mycorrhized pine experiment composed of labelled Postia necromass and P. involutus culture in interaction with pine seedlings. The isotopic labelling was measured in both experiments. In pure culture, P. involutus was able to mobilize N, but C as well, from the Postia necromass. In the symbiotic interaction experiment, we measured high 15N enrichments in all plant and fungal compartments. Interestingly, 13C remains mainly in the mycelium and mycorrhizas, demonstrating that the EM fungus transferred essentially N from the necromass to the tree. These observations reveal that fungal organic matter could represent a significant N source for EM fungi and trees, but also a C source for mycorrhizal fungi, including in symbiotic lifestyle.
ano.nymous@ccsd.cnrs.fr.invalid (Emila Akroume) 12 Jun 2019
https://hal.science/hal-02154447v1
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[hal-04492051] Analyse de l'évolution de la production de truffe noire du Périgord (Tuber Melanosporum Vitad.) de 1903-1904 à 1988-1989 dans le Vaucluse
[...]
ano.nymous@ccsd.cnrs.fr.invalid (Meili Baragatti) 06 Mar 2024
https://hal.inrae.fr/hal-04492051v1
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[hal-02624939] Using stable isotope approach to quantify pond dam impacts on isotopic niches and assimilation of resources by invertebrates in temporary streams: a case study
Fishponds built across streams can greatly affect their functioning, especially through loss of ecological continuity but also changes in water availability and trophic resources. Yet, their consequences on communities and stream functioning remain largely understudied. We investigated effects of fishpond dams on the trophic ecology of macroinvertebrate communities in temporary low-order streams using C and N stable isotopes. Food resources and macroinvertebrates were sampled in one upstream and one downstream site of two temporary streams, one stream without (reference stream) versus one with a fishpond (impacted stream) and used for isotopic analyses. Results suggested moderate effects of fishponds on the upstream tributaries. In contrast, at the downstream impacted site, ten times higher macroinvertebrate biomass and modifications in the trophic niches were recorded, likely due to changes in resource availability/quality and dam-related hydrology. By modifying the food sources as well as water fluxes, fishpond dams tend to alter macroinvertebrate communities but also shift the trophic dynamics downstream. This assessment stresses the need for exploring their impacts on food webs and nutrient fluxes at larger downstream distances to better understand their effects before drawing conclusions in regard to their management.
ano.nymous@ccsd.cnrs.fr.invalid (Brian Four) 16 Jun 2022
https://hal.inrae.fr/hal-02624939v1
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[hal-02311392] The functional trait spectrum of European temperate grasslands
Questions What is the functional trait variation of European temperate grasslands and how does this reflect global patterns of plant form and function? Do habitat specialists show trait differentiation across habitat types? Location Europe. Methods We compiled 18 regeneration and non-regeneration traits for a continental species pool consisting of 645 species frequent in five grassland types. These grassland types are widely distributed in Europe but differentiated by altitude, soil bedrock and traditional long-term management and disturbance regimes. We evaluated the multivariate trait space of this entire species pool and compared multi-trait variation and mean trait values of habitat specialists grouped by grassland type. Results The first dimension of the trait space accounted for 23% of variation and reflected a gradient between fast-growing and slow-growing plants. Plant height and SLA contributed to both the first and second ordination axes. Regeneration traits mainly contributed to the second and following dimensions to explain 56% of variation across the first five axes. Habitat specialists showed functional differences between grassland types mainly through non-regeneration traits. Conclusions The trait spectrum of plants dominating European temperate grasslands is primarily explained by growth strategies which are analogous to the trait variation observed at the global scale, and secondly by regeneration strategies. Functional differentiation of habitat specialists across grassland types is mainly related to environmental filtering linked with altitude and disturbance. This filtering pattern is mainly observed in non-regeneration traits, while most regeneration traits demonstrate multiple strategies within the same habitat type.
ano.nymous@ccsd.cnrs.fr.invalid (Emma Ladouceur) 26 May 2020
https://hal.science/hal-02311392v1
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[hal-02625305] Chilling and forcing temperatures interact to predict the onset of wood formation in Northern Hemisphere conifers
The phenology of wood formation is a critical process to consider for predicting how trees from the temperate and boreal zones may react to climate change. Compared to leaf phenology, however, the determinism of wood phenology is still poorly known. Here, we compared for the first time three alternative ecophysiological model classes (threshold models, heat-sum models and chilling-influenced heat-sum models) and an empirical model in their ability to predict the starting date of xylem cell enlargement in spring, for four major Northern Hemisphere conifers (Larix decidua, Pinus sylvestris, Picea abies and Picea mariana). We fitted models with Bayesian inference to wood phenological data collected for 220 site-years over Europe and Canada. The chilling-influenced heat-sum model received most support for all the four studied species, predicting validation data with a 7.7-day error, which is within one day of the observed data resolution. We conclude that both chilling and forcing temperatures determine the onset of wood formation in Northern Hemisphere conifers. Importantly, the chilling-influenced heat-sum model showed virtually no spatial bias whichever the species, despite the large environmental gradients considered. This suggests that the spring onset of wood formation is far less affected by local adaptation than by environmentally driven plasticity. In a context of climate change, we therefore expect rising winter-spring temperature to exert ambivalent effects on the spring onset of wood formation, tending to hasten it through the accumulation of forcing temperature, but imposing a higher forcing temperature requirement through the lower accumulation of chilling.
ano.nymous@ccsd.cnrs.fr.invalid (Nicolas Delpierre) 04 Apr 2024
https://hal.inrae.fr/hal-02625305v1
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[hal-02168619] Nondestructive and Fast Vibration Phenotyping of Plants
The frequencies of free oscillations of plants, or plant parts, depend on their geometries, stiffnesses, and masses. Besides direct biomechanical interest, free frequencies also provide insights into plant properties that can usually only be measured destructively or with low-throughput techniques (e.g., change in mass, tissue density, or stiffness over development or with stresses). We propose here a new high-throughput method based on the noncontact measurements of the free frequencies of the standing plant. The plant is excited by short air pulses (typically 100 ms). The resulting motion is recorded by a high speed video camera (100 fps) and processed using fast space and time correlation algorithms. In less than a minute the mechanical behavior of the plant is tested over several directions. The performance and versatility of this method has been tested in three contrasted species: tobacco (Nicotiana benthamian), wheat (Triticum aestivum L.), and poplar (Populus sp.), for a total of more than 4000 data points. In tobacco we show that water stress decreased the free frequency by 15%. In wheat we could detect variations of less than 1 g in the mass of spikes. In poplar we could measure frequencies of both the whole stem and leaves. The work provides insight into new potential directions for development of phenotyping.
ano.nymous@ccsd.cnrs.fr.invalid (Emmanuel de Langre) 28 Jun 2019
https://hal.science/hal-02168619v1
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[hal-02622295] Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers
Oaks are dominant forest tree species widely distributed across the Northern Hemisphere, where they constitute natural resources of economic, ecological, social and historical value. Hybridisation and adaptive introgression have long been thought to be major drivers of their ecological success. Therefore, the maintenance of species barriers remains a key question, given the extent of interspecific gene flow. In this study, we made use of the tremendous genetic variation among four European white oak species (31 million single nucleotide polymorphisms (SNPs)) to infer the evolutionary history of these species, study patterns of genetic differentiation and identify reproductive barriers. We first analysed the ecological and historical relationships among these species and inferred a long-term strict isolation followed by a recent and extensive postglacial contact using approximate Bayesian computation. Assuming this demographic scenario, we then performed backward simulations to generate the expected distributions of differentiation under neutrality to scan their genomes for reproductive barriers. We finally identified important intrinsic and ecological functions driving the reproductive isolation. We discussed the importance of identifying the genetic basis for the ecological preferences between these oak species and its implications for the renewal of European forests under global warming.
ano.nymous@ccsd.cnrs.fr.invalid (Thibault Leroy) 07 Dec 2023
https://hal.inrae.fr/hal-02622295v1
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[hal-02263853] Annotation data about multi criteria assessment methods used in the agri-food research: The French national institute for agricultural research (INRA) experience
This data article contains annotation data characterizing MultiCriteria Assessment (MCA) Methods proposed in the agri-food sector by researchers from INRA, Europe's largest agricultural research institute (INRA, http://institut.inra.fr/en). MCA can be used to assess and compare agricultural and food systems, and support multi-actor decision making and design of innovative systems for crop production, animal production and processing of agricultural products. These data are stored in a public repository managed by INRA (https://data.inra.fr/; https://doi.org/10.15454/WB51LL).
ano.nymous@ccsd.cnrs.fr.invalid (Geneviève Gésan-Guiziou) 05 Aug 2019
https://hal.science/hal-02263853v1
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[hal-02181076] Air temperature optima of vegetation productivity across global biomes.
The global distribution of the optimum air temperature for ecosystem-level gross primary productivity ([Formula: see text]) is poorly understood, despite its importance for ecosystem carbon uptake under future warming. We provide empirical evidence for the existence of such an optimum, using measurements of in situ eddy covariance and satellite-derived proxies, and report its global distribution. [Formula: see text] is consistently lower than the physiological optimum temperature of leaf-level photosynthetic capacity, which typically exceeds 30 °C. The global average [Formula: see text] is estimated to be 23 ± 6 °C, with warmer regions having higher [Formula: see text] values than colder regions. In tropical forests in particular, [Formula: see text] is close to growing-season air temperature and is projected to fall below it under all scenarios of future climate, suggesting a limited safe operating space for these ecosystems under future warming.
ano.nymous@ccsd.cnrs.fr.invalid (Mengtian Huang) 11 Jul 2019
https://hal.science/hal-02181076v1
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[hal-02384139] Fructification du Hêtre et des Chênes en France : rôle des températures, du pollen et du bilan de carbone et relation avec la croissance des peuplements
Dans cette étude, nous avons analysé les déterminants environnementaux de la variabilité spatiale et temporelle de la fructification des trois espèces feuillues européennes majeures : Quercus robur, Quercus petraea et Fagus sylvatica. Nous avons étudié les relations entre la production de fruits, l’émission de pollen, les ressources carbonées et hydriques et les conditions climatiques sur la période 1994-2007 (14 ans) à partir de 48 peuplements du réseau RENECOFOR. La production moyenne des fruits est de 251 kg/ha/an pour les Chênes et de 174 kg/ha/an pour le Hêtre. Pour le Hêtre, la production suit un rythme bisannuel très net et est synchrone entre les sites. Elle apparaît beaucoup plus variable pour les Chênes sans synchronisme net. Pour les Chênes, la fructification dépend très fortement des conditions thermiques durant la période d’émission du pollen (début avril) confirmant l’hypothèse du synchronisme pollinique pour ces espèces. Pour le Hêtre, la production dépend très fortement des écarts de température estivale entre les années. Pour les deux espèces, les relations entre la production de fruits et les différents déterminants suivent des lois non linéaires avec des forts effets seuil et des interactions complexes. Enfin, pour le Hêtre, la croissance radiale est réduite en cas de forte fructification alors que les années de bonne glandée sont aussi des années de forte croissance pour les Chênes. Les deux espèces présentent donc deux comportements opposés concernant les stratégies d’allocation entre la croissance radiale et la production de fruits.
ano.nymous@ccsd.cnrs.fr.invalid (François F. Lebourgeois) 28 Nov 2019
https://agroparistech.hal.science/hal-02384139v1
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[hal-02384184] Les réponses observées des arbres aux variations du climat (croissance, phénologie foliaire et fructification)
[...]
ano.nymous@ccsd.cnrs.fr.invalid (François Lebourgeois) 16 Jul 2024
https://agroparistech.hal.science/hal-02384184v1
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[hal-02373054] Biomasse microbienne carbonée et activités enzymatiques : gammes de valeurs obtenues pour différents sols agricoles français et belges
Depuis plusieurs décennies, les micro-organismes du sol ont été identifiés comme des acteurs majeurs du fonctionnement des sols et certaines variables microbiennes (abondance, diversité et activités) sont utilisées pour évaluer la qualité biologique des sols. Plus particulièrement, les activités enzymatiques d’origine microbienne impliquées dans la minéralisation des matières organiques des sols suscitent un fort intérêt ; néanmoins, aucun référentiel n’existe actuellement afin de les utiliser comme des indicateurs prédictifs des fonctions inhérentes à la fertilité des sols agricoles. Dans ce contexte, nous avons mesuré six activités enzymatiques (protéases, arginine- et leucine- aminopeptidases, β-glucosidases, phosphatases acides, arylsulfatases) impliquées dans la décomposition / minéralisation des matières organiques du sol, ainsi que la biomasse microbienne, sur six dispositifs expérimentaux situés dans différents contextes pédoclimatiques français et belges. Les résultats obtenus confirment que la gamme de valeurs d’activités enzymatiques et de biomasse microbienne mesurées pour différents types de sols est très large. Ainsi, les moyennes par dispositif des activités enzymatiques (exprimées par gramme de sol) varient d’un facteur compris entre 2,7 (pour les protéases) et 9,7 (pour les arylsulfatases). Concernant le carbone de la biomasse microbienne, les moyennes par dispositif varient de 159 à 488 µg C g-1 sol. Nos résultats montrent que cette biomasse microbienne, exprimée comme une fraction du carbone organique du sol, varie de 1,5 à 3,1 %. Cette variabilité des activités enzymatiques et de la biomasse microbienne en fonction des sites apparaît fortement liée aux différences de caractéristiques physico-chimiques des sols, et certainement au mode d’occupation des sols. Notamment, les variables microbiennes mesurées sont toutes significativement corrélées, certaines positivement (protéases, arginine- et leucine- aminopeptidases, β-glucosidases, biomasse microbienne), d’autres négativement (phosphatases acides, arylsulfatases) à la teneur en argile du sol. Nos résultats confirment ainsi la nécessité de disposer, pour chaque type de sol, d’un référentiel de valeurs d’activités enzymatiques et de biomasse microbienne avant d’envisager le développement d’indicateurs de fertilité des sols basés sur ces métriques.
ano.nymous@ccsd.cnrs.fr.invalid (Caroline Petitjean) 25 Apr 2022
https://hal.science/hal-02373054v1
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[hal-02165403] Infiltration from the Pedon to Global Grid Scales: An Overview and Outlook for Land Surface Modeling
Infiltration in soils is a key process that partitions precipitation at the land surface into surface runoff and water that enters the soil profile. We reviewed the basic principles of water infiltration in soils and we analyzed approaches commonly used in land surface models (LSMs) to quantify infiltration as well as its numerical implementation and sensitivity to model parameters. We reviewed methods to upscale infiltration from the point to the field, hillslope, and grid cell scales of LSMs. Despite the progress that has been made, upscaling of local-scale infiltration processes to the grid scale used in LSMs is still far from being treated rigorously. We still lack a consistent theoretical framework to predict effective fluxes and parameters that control infiltration in LSMs. Our analysis shows that there is a large variety of approaches used to estimate soil hydraulic properties. Novel, highly resolved soil information at higher resolutions than the grid scale of LSMs may help in better quantifying subgrid variability of key infiltration parameters. Currently, only a few LSMs consider the impact of soil structure on soil hydraulic properties. Finally, we identified several processes not yet considered in LSMs that are known to strongly influence infiltration. Especially, the impact of soil structure on infiltration requires further research. To tackle these challenges and integrate current knowledge on soil processes affecting infiltration processes into LSMs, we advocate a stronger exchange and scientific interaction between the soil and the land surface modeling communities.
ano.nymous@ccsd.cnrs.fr.invalid (Harry Vereecken) 25 Jun 2019
https://hal.sorbonne-universite.fr/hal-02165403v1
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[hal-02352504] The effect of tree diversity on the resistance and recovery of forest stands in the French Alps may depend on species differences in hydraulic features
As climate change should lead to an increase in the vulnerability and the sensitivity of forests to extreme climatic events, quantifying and predicting their response to more severe droughts remains a key task for foresters. Furthermore, recent works have suggested that tree diversity may affect forest ecosystem functioning, including their response to extreme events. In this study we aimed at testing whether the growth response of forest stands to stressful climatic events varied between mixed and monospecific stands, under various environmental conditions. We focused on beech-fir forests (Fagus sylvatica [L.] and Abies albs [L.]) and beech-oak forests (F. sylvatica [L.] and Quercus pubescent [L.]) in the French Alps. We used a dendrochronological dataset sampled in forest plots organized by triplets (one mixture and two monospecific stands) distributed in six sites along a latitudinal gradient. We tested (1) whether stand diversity (two-species stands vs monospecific stands) modulates the stands' response to drought events in terms of productivity, (2) whether species identity may drive the diversity effect on resistance and recovery, and (3) whether this can be explained by interspecific interactions. We found that (1) interspecific differences in response to extreme drought events (possibly due to interspecific differences in hydraulic characteristics) can induce a mixture effect on stand growth, although it appeared (2) to be strongly depending on species identity (positive effect only found for beech-fir mixed stands), while (3) there were no significant non-additive effects of diversity on stand resistance and recovery, except for some specific cases. Overall, our study shows that promoting selected mixed stands management may buffer extreme drought effect on stand productivity.
ano.nymous@ccsd.cnrs.fr.invalid (Marion Jourdan) 20 Jul 2022
https://hal.science/hal-02352504v1
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[hal-02501278] Wood formation and tree adaptation to climate
This special issue of Annals of Forest Science compiles ten papers on “Wood formation and tree adaptation to climate”, which were presented at “Le Studium” International Conference in May 2018 in Orléans (France). These papers present observational, experimental and modelling studies investigating the influence of climatic changes on tree growth from the hour to the century, and from the cell to the landscape
ano.nymous@ccsd.cnrs.fr.invalid (Cyrille Rathgeber) 06 Mar 2020
https://hal.science/hal-02501278v1
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[hal-02921264] Effects of organic inputs derived from pea and wheat root functional traits on soil protease activities
Legume-derived organic inputs such as crop residues or compounds derived from rhizodeposition can influence soil microbial activities implicated in the degradation of organic N. Crops succeeding legumes can also be important drivers of such microbial activities, and trait-based approaches can be employed to better understand the influence of plants on soil microbial activities. The objective of this study was to examine the effects of organic inputs (rhizodeposits and crop residues) of previously planted pea together with wheat root traits on soil protease activities. We measured soil protease activities, soil variables describing C and N availability and microbial biomass N and wheat root functional traits related to resource acquisition and rhizodeposition at 5 wheat developmental stages. Soil protease activities were significantly increased by the addition of pea crop residues, whereas previous pea cropping (i.e., soil containing organic inputs derived from pea rhizodeposition) did not influence these activities. The percentage of fine roots < 0.1 mm in diameter was the only root trait that contributed to variation in soil protease activities. Other belowground traits related to plant nutrient competitive abilities (specific root length, root N uptake, root biomass, and hot water-extractable root N) did not influence soil protease activities. We showed that pea crop residues, acting as substrates, are the main drivers of soil protease activities. However, our results highlight the importance of considering fine roots to understand the effects of plants on soil microbial activities implicated in N mineralization.
ano.nymous@ccsd.cnrs.fr.invalid (Nicolas Romillac) 25 Aug 2020
https://hal.science/hal-02921264v1
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[hal-02178457] The impact of prolonged drought on phloem anatomy and phloem transport in young beech trees
Phloem failure has recently been recognized as one of the mechanisms causing tree mortality under drought, though direct evidence is still lacking. We combined 13C pulse-labelling of 8-year-old beech trees (Fagus sylvatica L.) growing outdoors in a nursery with an anatomical study of the phloem tissue in their stems to examine how drought alters carbon transport and phloem transport capacity. For the six trees under drought, predawn leaf water potential ranged from -0.7 to -2.4 MPa, compared with an average of -0.2 MPa in five control trees with no water stress. We also observed a longer residence time of excess 13C in the foliage and the phloem sap in trees under drought compared with controls. Compared with controls, excess 13C in trunk respiration peaked later in trees under moderate drought conditions and showed no decline even after 4 days under more severe drought conditions. We estimated higher phloem sap viscosity in trees under drought. We also observed much smaller sieve-tube radii in all drought-stressed trees, which led to lower sieve-tube conductivity and lower phloem conductance in the tree stem. We concluded that prolonged drought affected phloem transport capacity through a change in anatomy and that the slowdown of phloem transport under drought likely resulted from a reduced driving force due to lower hydrostatic pressure between the source and sink organs.
ano.nymous@ccsd.cnrs.fr.invalid (Masako Dannoura) 09 Jul 2019
https://hal.science/hal-02178457v1
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[hal-02178452] Drought impacts on tree phloem
On-going climate change is increasing the risk of drought stress across large areas worldwide. Such drought events decrease ecosystem productivity and have been increasingly linked to tree mortality. Understanding how trees respond to water shortage is key to predicting the future of ecosystem functions. Phloem is at the core of the tree functions, moving resources such as non-structural carbohydrates, nutrients, and defence and information molecules across the whole plant. Phloem function and ability to transport resources is tightly controlled by the balance of carbon and water fluxes within the tree. As such, drought is expected to impact phloem function by decreasing the amount of available water and new photoassimilates. Yet, the effect of drought on the phloem has received surprisingly little attention in the last decades. Here we review existing knowledge on drought impacts on phloem transport from loading and unloading processes at cellular level to possible effects on long-distance transport and consequences to ecosystems via ecophysiological feedbacks. We also point to new research frontiers that need to be explored to improve our understanding of phloem function under drought. In particular, we show how phloem transport is affected differently by increasing drought intensity, from no response to a slowdown, and explore how severe drought might actually disrupt the phloem transport enough to threaten tree survival. Because transport of resources affects other organisms interacting with the tree, we also review the ecological consequences of phloem response to drought and especially predatory, mutualistic and competitive relations. Finally, as phloem is the main path for carbon from sources to sink, we show how drought can affect biogeochemical cycles through changes in phloem transport. Overall, existing knowledge is consistent with the hypotheses that phloem response to drought matters for understanding tree and ecosystem function. However, future research on a large range of species and ecosystems is urgently needed to gain a comprehensive understanding of the question.
ano.nymous@ccsd.cnrs.fr.invalid (Yann Salmon) 09 Jul 2019
https://hal.science/hal-02178452v1
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[hal-02179547] Introduction to the invited issue on phloem function and dysfunction
Introduction to the invited issue on phloem function and dysfunction
ano.nymous@ccsd.cnrs.fr.invalid (Daniel Epron) 10 Jul 2019
https://hal.science/hal-02179547v1
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[hal-02178455] Estimation of phloem carbon translocation belowground at stand level in a hinoki cypress stand
At stand level, carbon translocation in tree stems has to match canopy photosynthesis and carbohydrate requirements to sustain growth and the physiological activities of belowground sinks. This study applied the Hagen-Poiseuille equation to the pressure-flow hypothesis to estimate phloem carbon translocation and evaluate what percentage of canopy photosynthate can be transported belowground in a hinoki cypress (Chamaecyparis obtusa Sieb. et Zucc.) stand. An anatomical study revealed that, in contrast to sieve cell density, conductive phloem thickness and sieve cell hydraulic diameter at 1.3 m in height increased with increasing tree diameter, as did the concentration of soluble sugars in the phloem sap. At tree level, hydraulic conductivity increased by two orders of magnitude from the smallest to the largest trees in the stand, resulting in a stand-level hydraulic conductance of 1.7 × 10-15 m Pa-1 s-1. The osmotic potential of the sap extracted from the inner bark was -0.75 MPa. Assuming that phloem water potential equalled foliage water potential at predawn, the turgor pressure in the phloem at 1.3 m in height was estimated at 0.22 MPa, 0.59 MPa lower than values estimated in the foliage. With this maximal turgor pressure gradient, which would be lower during day-time when foliage water potential drops, the estimated stand-level rate of carbon translocation was 2.0 gC m-2 day-1 (30% of daily gross canopy photosynthesis), at a time of the year when aboveground growth and related respiration is thought to consume a large fraction of photosynthate, at the expense of belowground activity. Despite relying on some assumptions and approximations, this approach, when coupled with measurements of canopy photosynthesis, may further be used to provide qualitative insight into the seasonal dynamics of belowground carbon allocation.
ano.nymous@ccsd.cnrs.fr.invalid (Daniel Epron) 09 Jul 2019
https://hal.science/hal-02178455v1
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[hal-02320571] Quelle pertinence du modèle diversité-productivité-perturbations pour analyser l’influence des pratiques agricoles sur la diversité des prairies permanentes du Massif central ?
Un modèle a été réalisé pour évaluer l’impact des pratiques agricoles sur la diversité des prairies. Pour tester les prédictions d’un modèle théorique d’écologie, le modèle d’équilibre dynamique, nous avons suivi 18 prairies permanentes du Massif central aux pédoclimats et modes de gestion variés. Nous avons mis en évidence une diminution de la richesse spécifique liée à l’augmentation de la quantité de biomasse exportée (pâturée ou fauchée) et une diminution de la richesse fonctionnelle liée à l’augmentation de la productivité. Ces effets n’expliquent toutefois qu’une faible part de la variabilité observée entre sites. La quantité de biomasse exportée dépend du nombre de fauches et du chargement animal annuel ; la productivité était avant tout dépendante des précipitations durant la période d’étude, et non de la fertilisation. Nous discutons de l’intérêt et des limites de l’utilisation du modèle pour la gestion de la diversité des prairies.
ano.nymous@ccsd.cnrs.fr.invalid (Rémi Perronne) 18 Oct 2019
https://hal.science/hal-02320571v1
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[hal-02411666] The commonness of rarity: Global and future distribution of rarity across land plants
A key feature of life’s diversity is that some species are common but many more are rare. Nonetheless, at global scales, we do not know what fraction of biodiversity consists of rare species. Here, we present the largest compilation of global plant diversity to quantify the fraction of Earth’s plant biodiversity that are rare. A large fraction, ~36.5% of Earth’s ~435,000 plant species, are exceedingly rare. Sampling biases and prominent models, such as neutral theory and the k-niche model, cannot account for the observed prevalence of rarity. Our results indicate that (i) climatically more stable regions have harbored rare species and hence a large fraction of Earth’s plant species via reduced extinction risk but that (ii) climate change and human land use are now disproportionately impacting rare species. Estimates of global species abundance distributions have important implications for risk assessments and conservation planning in this era of rapid global change.
ano.nymous@ccsd.cnrs.fr.invalid (Brian Enquist) 31 May 2021
https://hal.science/hal-02411666v1
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[hal-02432407] Large hydraulic safety margins protect Neotropical canopy rainforest tree species against hydraulic failure during drought
Abundant Neotropical canopy-tree species are more resistant to drought-induced branch embolism than what is currently admitted. Large hydraulic safety margins protect them from hydraulic failure under actual drought conditions.ContextXylem vulnerability to embolism, which is associated to survival under extreme drought conditions, is being increasingly studied in the tropics, but data on the risk of hydraulic failure for lowland Neotropical rainforest canopy-tree species, thought to be highly vulnerable, are lacking.AimsThe purpose of this study was to gain more knowledge on species drought-resistance characteristics in branches and leaves and the risk of hydraulic failure of abundant rainforest canopy-tree species during the dry season.MethodsWe first assessed the range of branch xylem vulnerability to embolism using the flow-centrifuge technique on 1-m-long sun-exposed branches and evaluated hydraulic safety margins with leaf turgor loss point and midday water potential during normal- and severe-intensity dry seasons for a large set of Amazonian rainforest canopy-tree species.ResultsTree species exhibited a broad range of embolism resistance, with the pressure threshold inducing 50% loss of branch hydraulic conductivity varying from − 1.86 to − 7.63 MPa. Conversely, we found low variability in leaf turgor loss point and dry season midday leaf water potential, and mostly large, positive hydraulic safety margins.ConclusionsRainforest canopy-tree species growing under elevated mean annual precipitation can have high resistance to embolism and are more resistant than what was previously thought. Thanks to early leaf turgor loss and high embolism resistance, most species have a low risk of hydraulic failure and are well able to withstand normal and even severe dry seasons.
ano.nymous@ccsd.cnrs.fr.invalid (Camille Ziegler) 14 Dec 2020
https://hal.umontpellier.fr/hal-02432407v1
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[hal-02011754] Explaining the larger seed bank of an invasive shrub in non-native versus native environments by differences in seed predation and plant size
•Background and aims - Large, persistent seed banks contribute to the invasiveness of non-native plants, and maternal plant size is an important contributory factor. We explored the relationships between plant vegetative size (V) and soil seed bank size (S) for the invasive shrub (Ulex europaeus) in its native range and in non-native populations, and identified which other factors may contribute to seed bank variation between native and invaded regions. •Methods - We compared the native region (France) with two regions where Ulex is invasive, one with seed predators introduced for biological control (New Zealand) and another where seed predators are absent (La Réunion). We quantified seed bank size, plant dimensions, seed predation, and soil fertility for six stands in each of the three regions.•Key results - Seed banks were 9 to 14 times larger in the two invaded regions compared to native France. We found a positive relationship between current seed bank size and actual plant size, and that any deviation from this relationship was probably due to large differences in seed predation and/or soil fertility. We further identified three possible factors explaining larger seed banks in non-native environments: larger maternal plant size, lower activity of seed predators and higher soil fertility. •Conclusions - In highlighting a positive relationship between maternal plant size and seed bank size, and identifying additional factors that regulate soil seed bank dynamics in non-native ranges, our data offer a number of opportunities for invasive weed control. For non-native Ulex populations specifically, management focusing on 'S' (i.e. the reduction of the seed bank by stimulating germination, or the introduction of seed predators as biological control agents), and/or 'V' (i.e. by cutting mature stands to reduce maternal plant biomass) offers the most probable combination of effective control options.
ano.nymous@ccsd.cnrs.fr.invalid (Mark Bakker) 13 Feb 2019
https://hal.science/hal-02011754v1
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[hal-02111822] Soils Drowned in Water Impoundments: A New Frontier
Water impoundments have major impacts on biogeochemical cycles at the local and global scales. However, although reservoirs flood soils, their biogeochemical evolution below water and its ecological consequences are very poorly documented. We took advantage of the complete emptying of the Guerlédan Reservoir (Brittany, France) to compare the composition of soils flooded for 84 years with that of adjacent non-flooded soils used as reference, in 3 situations contrasted by their soil type (Cambisol and Podzol) and initial land-use (forest or grassland). In the annual drawdown zone, upper horizons of submerged soils are eroded, especially near the upper shore and on slopes. In the permanently drowned area, silty sediments cover drowned soils. Compared to reference soils, forest soils drowned for 84 years maintain their original morphological differentiation, but colors are dull, and the humus (O horizons) have virtually disappeared. Spodic horizons are depleted in poorly crystallized iron minerals while the accumulation of amorphous aluminum compounds remains unchanged. Soil bulk density increases as well as pH while total phosphorus content is almost unchanged. On the other hand, the pH of drowned grassland soils is lower by almost one unit, and the total phosphorus content was halved compared to reference soils. In this context, in addition to the effects of flooding, differences are attributed to post-1950 changes in agricultural practices i.e., liming and fertilization. Organic matter stocks decrease by almost 40%. This rate is similar in Cambisols and Podzols. Assuming that carbon was lost as CO2 and CH4, the corresponding flux averaged over the reservoir’s life is close to global areal estimates of CO2 emissions in temperate reservoirs and offsets a significant proportion of the carbon burial in reservoir sediments. Hence, flooded soils contribute significantly to the GHG budget of reservoirs, provide original long-term experimental sites to measure the effects of anoxia on soils and contain archives of past soil properties.
ano.nymous@ccsd.cnrs.fr.invalid (Jim Félix-Faure) 26 Apr 2019
https://hal.science/hal-02111822v1
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[hal-02943204] Importance of Detoxification Processes in Ozone Risk Assessment: Need to Integrate the Cellular Compartmentation of Antioxidants?
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ano.nymous@ccsd.cnrs.fr.invalid (Nicolas Dusart) 22 Jul 2024
https://hal.science/hal-02943204v1
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[hal-02623508] Impact of bias correction and downscaling through quantile mapping on simulated climate change signal: a case study over Central Italy
Quantile mapping (QM) represents a common post-processing technique used to connect climate simulations to impact studies at different spatial scales. Depending on the simulation-observation spatial scale mismatch, QM can be used for two different applications. The first application uses only the bias correction component, establishing transfer functions between observations and simulations at similar spatial scales. The second application includes a statistical downscaling component when point-scale observations are considered. However, knowledge of alterations to climate change signal (CCS) resulting from these two applications is limited. This study investigates QM impacts on the original temperature and precipitation CCSs when applied according to a bias correction only (BC-only) and a bias correction plus downscaling (BC + DS) application over reference stations in Central Italy. BC-only application is used to adjust regional climate model (RCM) simulations having the same resolution as the observation grid. QM BC + DS application adjusts the same simulations to point-wise observations. QM applications alter CCS mainly for temperature. BC-only application produces a CCS of the median ~ 1 °C lower than the original (~ 4.5 °C). BC + DS application produces CCS closer to the original, except over the summer 95th percentile, where substantial amplification of the original CCS resulted. The impacts of the two applications are connected to the ratio between the observed and the simulated standard deviation (STD) of the calibration period. For the precipitation, original CCS is essentially preserved in both applications. Yet, calibration period STD ratio cannot predict QM impact on the precipitation CCS when simulated STD and mean are similarly misrepresented.
ano.nymous@ccsd.cnrs.fr.invalid (Lorenzo Sangelantoni) 26 May 2020
https://hal.inrae.fr/hal-02623508v1
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[hal-02942682] Robust Response of Terrestrial Plants to Rising CO2
Human-caused CO 2 emissions over the past century have caused the climate of the Earth to warm and have directly impacted on the functioning of terrestrial plants. We examine the global response of terrestrial gross primary production (GPP) to the historic change in atmospheric CO 2. The GPP of the terrestrial biosphere has increased steadily, keeping pace remarkably in proportion to the rise in atmospheric CO 2. Water-use efficiency, namely the ratio of CO 2 uptake by photosynthesis to water loss by transpiration, has increased as a direct leaf-level effect of rising CO 2. This has allowed an increase in global leaf area, which has conspired with stimulation of photosynthesis per unit leaf area to produce a maximal response of the terrestrial biosphere to rising atmospheric CO 2 and contemporary climate change. Rising Atmospheric CO 2 and Global Climate Change Emissions of CO 2 associated with human industrial activity and land-use change over the past century have significantly impacted on global climate, causing global warming of about 1.0°C [1]. The anthropogenic CO 2 emission rate is continuing to increase, and the future rise in atmospheric CO 2 will undoubtedly lead to more climate change, including increases in the frequency of extreme climate events such as heatwaves, droughts, and storms [2]. Global climate change has the potential to significantly stress terrestrial vegetation [3], for example with hot, dry air, soil moisture deficits, or flooding. This could lead to a carbon-climate feedback in which widespread tree mortality and forest decline contribute to accelerating accumulation of CO 2 in the atmosphere [4-6]. On the other hand, plants interact directly with atmospheric CO 2 , and they can potentially respond to rising atmospheric CO 2 concentrations by increasing photosynthetic rates and water-use efficiency (see Glossary) [7-10]. Water-use efficiency in this context is defined as the amount of CO 2 taken up by photosynthesis for a given amount of water lost to the atmosphere by transpiration (Box 1). Understanding emergent responses of the production of terrestrial vegetation to the potentially opposing impacts of global climate change and CO 2 fertilization is crucial for formulating effective mitigation and adaptation strategies [11]. At a global scale, there is currently an imbalance between the amount of CO 2 absorbed by the terrestrial biosphere through photosynthesis and the amount released back to the atmosphere through plant respiration, decomposition, fire, and emissions from land-use change [12]. This is commonly referred to as the land carbon sink. It is slowing the rate of increase in atmospheric CO 2 that would otherwise result from anthropogenic CO 2 emissions. Predicting the future behaviour of the land carbon sink is one of the most important challenges in carbon cycle science, given the potential that feedbacks could accelerate the rate of future climate change [13]. This requires a thorough understanding of the process through which the terrestrial biosphere captures CO 2-photosynthesis. Highlights Global climate change caused by CO 2 emissions can stress terrestrial vegetation , potentially decreasing production. On the other hand, CO 2 interacts directly with plants, stimulating leaf-level photo-synthesis and water-use efficiency. The rise in atmospheric CO 2 concentration over the past century presents an opportunity for gauging the strength of the terrestrial biosphere response to these potential impacts. Atmospheric proxy and model analysis both suggest that global terrestrial photosynthesis has increased in nearly constant proportion to the rise in atmospheric CO 2 concentration, a maximal response by the terrestrial biosphere. An accurate understanding of the impacts of climate change on terrestrial vegetation is essential for managing risks associated with human-caused climate change: gauging the historic response of terrestrial photosynthesis is an important step in this direction.
ano.nymous@ccsd.cnrs.fr.invalid (Lucas A Cernusak) 18 Sep 2020
https://hal.inrae.fr/hal-02942682v1