2019 - UMR Silva

[hal-03889618] Soil and climate differently impact NDVI patterns according to the season and the stand type

Several studies use satellite-based normalized difference vegetation index (NDVI) to monitor the impact of climate change on vegetation covers. Good understanding of the drivers of NDVI patterns is hindered by the difficulties in disentangling the effects of environmental factors from anthropogenic changes, by the limited number of environmental predictors studied, and by the diversity of responses according to periods and land covers. This study aims to improve our understanding of the different environmental drivers of NDVI spatial variations for different stand type characteristics of mountain and Mediterranean biomes. Using NDVI values extracted from MODIS Terra time series, we calculated Spring Greenness (SG) and annual Relative Greenness (RGRE) to depict spring and summer vegetation activity, respectively, in a contrasted area of 10,255 km2 located in the south of France. We modeled SG and RGRE at different scales, using 20 environmental predictors characterizing available energy, water supply, and nutrient supply calculated for different periods of the year. In spring, high minimum temperatures, good nitrogen availability, and acidic or neutral pH turned out to be determining for greenness, particularly for stand types located in altitude. In summer, an important soil water reserve and low temperatures promoted vegetation dynamics, particularly for stands located in areas with a Mediterranean climate. Our results show that NDVI dynamics was not only driven by climatic variability, and should not be studied using only mean temperature and rainfall. They highlight that different environmental factors act complementarily, and that soil parameters characterizing water stress and soil nutrition should be taken into account. While the factors limiting NDVI values varied according to the season and the position of the stands along the ecological gradients, we identified a global temperature and water-stress threshold when considering the whole vegetation.

ano.nymous@ccsd.cnrs.fr.invalid (Christian Piedallu) 08 Dec 2022

https://hal.science/hal-03889618v1

[hal-02011754] Explaining the larger seed bank of an invasive shrub in non-native versus native environments by differences in seed predation and plant size

•Background and aims - Large, persistent seed banks contribute to the invasiveness of non-native plants, and maternal plant size is an important contributory factor. We explored the relationships between plant vegetative size (V) and soil seed bank size (S) for the invasive shrub (Ulex europaeus) in its native range and in non-native populations, and identified which other factors may contribute to seed bank variation between native and invaded regions. •Methods - We compared the native region (France) with two regions where Ulex is invasive, one with seed predators introduced for biological control (New Zealand) and another where seed predators are absent (La Réunion). We quantified seed bank size, plant dimensions, seed predation, and soil fertility for six stands in each of the three regions.•Key results - Seed banks were 9 to 14 times larger in the two invaded regions compared to native France. We found a positive relationship between current seed bank size and actual plant size, and that any deviation from this relationship was probably due to large differences in seed predation and/or soil fertility. We further identified three possible factors explaining larger seed banks in non-native environments: larger maternal plant size, lower activity of seed predators and higher soil fertility. •Conclusions - In highlighting a positive relationship between maternal plant size and seed bank size, and identifying additional factors that regulate soil seed bank dynamics in non-native ranges, our data offer a number of opportunities for invasive weed control. For non-native Ulex populations specifically, management focusing on 'S' (i.e. the reduction of the seed bank by stimulating germination, or the introduction of seed predators as biological control agents), and/or 'V' (i.e. by cutting mature stands to reduce maternal plant biomass) offers the most probable combination of effective control options.

ano.nymous@ccsd.cnrs.fr.invalid (Mark Bakker) 13 Feb 2019

https://hal.science/hal-02011754v1

[hal-02624939] Using stable isotope approach to quantify pond dam impacts on isotopic niches and assimilation of resources by invertebrates in temporary streams: a case study

Fishponds built across streams can greatly affect their functioning, especially through loss of ecological continuity but also changes in water availability and trophic resources. Yet, their consequences on communities and stream functioning remain largely understudied. We investigated effects of fishpond dams on the trophic ecology of macroinvertebrate communities in temporary low-order streams using C and N stable isotopes. Food resources and macroinvertebrates were sampled in one upstream and one downstream site of two temporary streams, one stream without (reference stream) versus one with a fishpond (impacted stream) and used for isotopic analyses. Results suggested moderate effects of fishponds on the upstream tributaries. In contrast, at the downstream impacted site, ten times higher macroinvertebrate biomass and modifications in the trophic niches were recorded, likely due to changes in resource availability/quality and dam-related hydrology. By modifying the food sources as well as water fluxes, fishpond dams tend to alter macroinvertebrate communities but also shift the trophic dynamics downstream. This assessment stresses the need for exploring their impacts on food webs and nutrient fluxes at larger downstream distances to better understand their effects before drawing conclusions in regard to their management.

ano.nymous@ccsd.cnrs.fr.invalid (Brian Four) 16 Jun 2022

https://hal.inrae.fr/hal-02624939v1

[hal-02436352] Single-image photogrammetry for deriving tree architectural traits in mature forest stands: a comparison with terrestrial laser scanning

We compared two methods for detailed individual tree measurements: single image photogrammetry (SIP), a simplified, low-cost method, and the state-of-the-art terrestrial laser scanning (TLS). Our results provide evidence that SIP can be successfully applied to obtain accurate tree architectural traits in mature forests.ContextTree crown variables are necessary in forest modelling; however, they are time consuming to measure directly, and they are measured in many different ways. We compare two methods to obtain crown variables: laser-based and image-based. TLS is an advanced technology for three-dimensional data acquisition; SIP is a simplified, low-cost method.AimsTo elucidate differences between the methods, and validate SIP accuracy and usefulness for forest research, we investigated if (1) SIP and TLS measurements are in agreement in terms of the most widely used tree characteristics; (2) differences between the SIP traits and their TLS counterparts are constant throughout tree density and species composition; (3) tree architectural traits obtained with SIP explain differences in laser-based crown projection area (CPA), under different forest densities and stand compositions; and (4) CPA modelled with SIP variables is more accurate than CPA obtained with stem diameter-based allometric models. We also examined the correspondence between local tree densities extracted from images and from field measurements.MethodsWe compared TLS and SIP in a temperate pure sessile oak and mixed with Scots pine stands, in the Orléans Forest, France. Standard major axis regression was used to establish relations between laser-based and image-based tree height and diameter at breast height. Four SIP-derived traits were compared between the levels of stand density and species composition with a t test, in terms of deviations and biases to their TLS counterparts. We created a set of linear and linear mixed models (LMMs) of CPATLS, with SIP variables. Both laser-based and image-based stem diameters were used to estimate CPA with the published allometric equations; the results were then compared with the best predictive LMM, in terms of similarity with CPATLS measurement. Local tree density extracted from images was compared with field measurements in terms of basic statistics and correlation. ResultsTree height and diameter at breast height were reliably represented by SIP (Pearson correlation coefficients r = 0.92 and 0.97, respectively). SIP measurements were affected by the stand composition factor; tree height attained higher mean absolute deviation (1.09 m) in mixed stands, compared to TLS, than in pure stands (0.66 m); crown width was more negatively biased in mixed stands (− 0.79 m), than in pure stands (− 0.05 m); and diameter at breast height and crown asymmetry were found unaffected. Crown width and mean branch angle were key SIP explanatory variables to predict CPATLS. The model was approximately 2-fold more accurate than the CPA allometric estimations with both laser-based and image-based stem diameters. SIP-derived local tree density was similar to the field-measured density in terms of mean and standard deviation (9.6 (3.5) and 9.4 (3.6) trees per plot, respectively); the correlation between both density measures was significantly positive (r = 0.76).ConclusionSIP-derived variables, such as crown width, mean branch angle, branch thickness, and crown asymmetry, were useful to explain tree architectural differences under different densities and stand compositions and may be implemented in many forest research applications. SIP may also provide a coarse measure of local competition, in terms of number of neighbouring trees. Our study provides the first test in mature forest stands, for SIP compared with TLS.

ano.nymous@ccsd.cnrs.fr.invalid (Kamil Kędra) 13 Jan 2020

https://hal.science/hal-02436352v1

[hal-04492051] Analyse de l'évolution de la production de truffe noire du Périgord (Tuber Melanosporum Vitad.) de 1903-1904 à 1988-1989 dans le Vaucluse

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ano.nymous@ccsd.cnrs.fr.invalid (Meili Baragatti) 06 Mar 2024

https://hal.inrae.fr/hal-04492051v1

[hal-01972724] Influence of annual climatic variations, climate changes, and sociological factors on the production of the Périgord black truffle (Tuber melanosporum Vittad.) from 1903–1904 to 1988–1989 in the Vaucluse (France)

From 1903–1904 to 1988–1989, the two World Wars and sociological factors as rural desertification and changes in land uses mainly explained the decline of black truffle production in the Vaucluse department, which well reflects that of the whole of France. These can be correlated with the annual climatic variations as well as, from 1924–1925 to 1948–1949, the raw production rates of the managed truffle orchard of Pernes-les-Fontaines located in Vaucluse. The two methods used (correlation coefficients and Bayesian functional linear regression with Sparse Step functions) gave consistent results: the main factor explaining the annual variations of truffle production was the summer climatic water deficit of the year n. A general model including the rural exodus and the cumulated climatic water deficit of summer months both allowed to well explain the evolution of truffle production from 1903–1904 to 1988–1989 in the Vaucluse and its huge decrease. During that period, global warming had little effect. However, in the twenty-first century, all the scenarios predict increased summer water stress for the Mediterranean region, which could greatly affect black truffle production.

ano.nymous@ccsd.cnrs.fr.invalid (Meïli Baragatti) 07 Jan 2019

https://hal.science/hal-01972724v1

[hal-02903210] Habitats forestiers et forêts habitées

Les 26 et 27 mars 2019 se tenait, au sein du Domaine national de Chambord, un colloque international regroupant une centaine de participants originaires d’une dizaine de pays. Cet évènement scientifique venait conclure le projet de recherche interdisciplinaire COSTAUD « Contribution des ongulés sauvages au fonctionnement de l’écosystème et aux services rendus à Chambord », financé par la Région Centre-Val de Loire au titre de son Appel à Projets de Recherche d’Intérêt Régional (édition 2015). Intitulé Habitats forestiers et forêts habitées, il visait à questionner les interactions existant en forêt et ses habitats associés entre la faune et les usages, modes de gestion et pratiques sociales, en se structurant autour de quatre thèmes. Le thème 1 du colloque s’est intéressé aux facteurs environnementaux et humains à l’origine des populations animales actuelles Dans le thème 2, il s’agissait d’interroger l’influence de la faune, en l’occurrence des grands herbivores, sur le fonctionnement des écosystèmes. Le thème 3 a abordé les conséquences des modes de gestion des habitats forestiers, afin d’en identifier les impacts sur la faune, notamment sur sa distribution spatiale. Enfin le thème 4 s’est intéressé à la manière dont la faune pouvait être valorisée par la société, c’est-à-dire aux usages et pratiques sociales associés à la faune sauvage et aux milieux forestiers.

ano.nymous@ccsd.cnrs.fr.invalid (Christophe Baltzinger) 24 Nov 2021

https://hal.inrae.fr/hal-02903210v1

[hal-02320571] Quelle pertinence du modèle diversité-productivité-perturbations pour analyser l’influence des pratiques agricoles sur la diversité des prairies permanentes du Massif central ?

Un modèle a été réalisé pour évaluer l’impact des pratiques agricoles sur la diversité des prairies. Pour tester les prédictions d’un modèle théorique d’écologie, le modèle d’équilibre dynamique, nous avons suivi 18 prairies permanentes du Massif central aux pédoclimats et modes de gestion variés. Nous avons mis en évidence une diminution de la richesse spécifique liée à l’augmentation de la quantité de biomasse exportée (pâturée ou fauchée) et une diminution de la richesse fonctionnelle liée à l’augmentation de la productivité. Ces effets n’expliquent toutefois qu’une faible part de la variabilité observée entre sites. La quantité de biomasse exportée dépend du nombre de fauches et du chargement animal annuel ; la productivité était avant tout dépendante des précipitations durant la période d’étude, et non de la fertilisation. Nous discutons de l’intérêt et des limites de l’utilisation du modèle pour la gestion de la diversité des prairies.

ano.nymous@ccsd.cnrs.fr.invalid (Rémi Perronne) 18 Oct 2019

https://hal.science/hal-02320571v1

[hal-02437587] TOFF, a database of traits of fish to promote advances in fish aquaculture

Functional traits can be valuable pieces of information for aquaculture research and management. Although fish traits have been the focus of an abundant research, trait datasets for these organisms are difficult to access and often unpractical to achieve meta-analyses without a time-consuming extensive review. Already available large-scale compilations include trait information for many fish species but not as detailed as required for aquaculture purpose. Here, we introduce the TOFF (i.e. Traits OF Fish), a database focusing on fish functional traits that aims at bringing together behavioral, morphological, phenological, and physiological traits always coupled to environmental measurement context into a single open-source access repository. TOFF hosts data from published field and experimental studies. Here, we release data for 228 traits for 174 species extracted from 165 publications and present a collaborative platform. We ultimately aim at providing an inclusive and accessible data resource to facilitate advances in aquaculture development

ano.nymous@ccsd.cnrs.fr.invalid (Thomas Lecocq) 13 Jan 2020

https://hal.science/hal-02437587v1

[hal-02165403] Infiltration from the Pedon to Global Grid Scales: An Overview and Outlook for Land Surface Modeling

Infiltration in soils is a key process that partitions precipitation at the land surface into surface runoff and water that enters the soil profile. We reviewed the basic principles of water infiltration in soils and we analyzed approaches commonly used in land surface models (LSMs) to quantify infiltration as well as its numerical implementation and sensitivity to model parameters. We reviewed methods to upscale infiltration from the point to the field, hillslope, and grid cell scales of LSMs. Despite the progress that has been made, upscaling of local-scale infiltration processes to the grid scale used in LSMs is still far from being treated rigorously. We still lack a consistent theoretical framework to predict effective fluxes and parameters that control infiltration in LSMs. Our analysis shows that there is a large variety of approaches used to estimate soil hydraulic properties. Novel, highly resolved soil information at higher resolutions than the grid scale of LSMs may help in better quantifying subgrid variability of key infiltration parameters. Currently, only a few LSMs consider the impact of soil structure on soil hydraulic properties. Finally, we identified several processes not yet considered in LSMs that are known to strongly influence infiltration. Especially, the impact of soil structure on infiltration requires further research. To tackle these challenges and integrate current knowledge on soil processes affecting infiltration processes into LSMs, we advocate a stronger exchange and scientific interaction between the soil and the land surface modeling communities.

ano.nymous@ccsd.cnrs.fr.invalid (Harry Vereecken) 25 Jun 2019

https://hal.sorbonne-universite.fr/hal-02165403v1

[hal-02621961] Améliorer la qualité des plants et leur taux de reprise

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ano.nymous@ccsd.cnrs.fr.invalid (Nathalie Ollat) 26 May 2020

https://hal.inrae.fr/hal-02621961v1

[hal-02411666] The commonness of rarity: Global and future distribution of rarity across land plants

A key feature of life’s diversity is that some species are common but many more are rare. Nonetheless, at global scales, we do not know what fraction of biodiversity consists of rare species. Here, we present the largest compilation of global plant diversity to quantify the fraction of Earth’s plant biodiversity that are rare. A large fraction, ~36.5% of Earth’s ~435,000 plant species, are exceedingly rare. Sampling biases and prominent models, such as neutral theory and the k-niche model, cannot account for the observed prevalence of rarity. Our results indicate that (i) climatically more stable regions have harbored rare species and hence a large fraction of Earth’s plant species via reduced extinction risk but that (ii) climate change and human land use are now disproportionately impacting rare species. Estimates of global species abundance distributions have important implications for risk assessments and conservation planning in this era of rapid global change.

ano.nymous@ccsd.cnrs.fr.invalid (Brian Enquist) 31 May 2021

https://hal.science/hal-02411666v1

[hal-02352504] The effect of tree diversity on the resistance and recovery of forest stands in the French Alps may depend on species differences in hydraulic features

As climate change should lead to an increase in the vulnerability and the sensitivity of forests to extreme climatic events, quantifying and predicting their response to more severe droughts remains a key task for foresters. Furthermore, recent works have suggested that tree diversity may affect forest ecosystem functioning, including their response to extreme events. In this study we aimed at testing whether the growth response of forest stands to stressful climatic events varied between mixed and monospecific stands, under various environmental conditions. We focused on beech-fir forests (Fagus sylvatica [L.] and Abies albs [L.]) and beech-oak forests (F. sylvatica [L.] and Quercus pubescent [L.]) in the French Alps. We used a dendrochronological dataset sampled in forest plots organized by triplets (one mixture and two monospecific stands) distributed in six sites along a latitudinal gradient. We tested (1) whether stand diversity (two-species stands vs monospecific stands) modulates the stands' response to drought events in terms of productivity, (2) whether species identity may drive the diversity effect on resistance and recovery, and (3) whether this can be explained by interspecific interactions. We found that (1) interspecific differences in response to extreme drought events (possibly due to interspecific differences in hydraulic characteristics) can induce a mixture effect on stand growth, although it appeared (2) to be strongly depending on species identity (positive effect only found for beech-fir mixed stands), while (3) there were no significant non-additive effects of diversity on stand resistance and recovery, except for some specific cases. Overall, our study shows that promoting selected mixed stands management may buffer extreme drought effect on stand productivity.

ano.nymous@ccsd.cnrs.fr.invalid (Marion Jourdan) 20 Jul 2022

https://hal.science/hal-02352504v1

[hal-02399726] The cost of deer to trees: changes in resource allocation from growth-related traits and phenolic content to structural defence

Background and aims-Plants may use various defence mechanisms to protect their tissues against deer browsing and the allocation of resources to defence may trade-off with plants' growth. In a context of increasing deer populations in European forests, understanding the resource allocation strategies of trees is critical to better assess their ability to face an increasing browsing pressure. The aim of this study was to determine how deer removal affects the resource allocation to both defensive and growth-related traits in field conditions for three tree species (Abies alba, Picea abies and Fagus sylvatica). Methods-We compared eight pairs of fenced-unfenced plots to contrast plots with and without browsing pressure. The pairs were set up in 2005 and 2014 to compare different fencing duration. We measured leaf and shoot traits related to the defence against herbivores (phenolic content, structural resistance, C:N ratio) and to the investment in plants' growth and productivity (specific leaf area and nutrient content). Key results-For the three species, the structural resistance of leaves and shoots was negatively correlated with SLA, nutrient content and phenolic content. For Abies alba, exclusion of deer decreased shoot structural resistance in favour of higher nutrient content, SLA and phenolic content. The fencing duration had no effect on the different measured traits. Conclusions-Our results support the assumption of a trade-off between structural defence and growth-related traits at the intraspecific scale for the three studied species. We also confirmed the hypothesis that exposure to deer browsing is involved in the resource allocation of woody species. For Abies alba, fencing led to a change in resource allocation from structural defence to growth-related traits and chemical defence.

ano.nymous@ccsd.cnrs.fr.invalid (Julien Barrere) 09 Dec 2019

https://hal.science/hal-02399726v1

[hal-02263853] Annotation data about multi criteria assessment methods used in the agri-food research: The French national institute for agricultural research (INRA) experience

This data article contains annotation data characterizing MultiCriteria Assessment (MCA) Methods proposed in the agri-food sector by researchers from INRA, Europe's largest agricultural research institute (INRA, http://institut.inra.fr/en). MCA can be used to assess and compare agricultural and food systems, and support multi-actor decision making and design of innovative systems for crop production, animal production and processing of agricultural products. These data are stored in a public repository managed by INRA (https://data.inra.fr/; https://doi.org/10.15454/WB51LL).

ano.nymous@ccsd.cnrs.fr.invalid (Geneviève Gésan-Guiziou) 05 Aug 2019

https://hal.science/hal-02263853v1

[hal-02629130] Identifying the tree species compositions that maximize ecosystem functioning in European forests

1. Forest ecosystem functioning generally benefits from higher tree species richness, but variation within richness levels is typically large. This is mostly due to the contrasting performances of communities with different compositions. Evidencebased understanding of composition effects on forest productivity, as well as on multiple other functions will enable forest managers to focus on the selection of species that maximize functioning, rather than on diversity per se. 2. We used a dataset of 30 ecosystem functions measured in stands with different species richness and composition in six European forest types. First, we quantified whether the compositions that maximize annual above-ground wood production (productivity) generally also fulfil the multiple other ecosystem functions (multifunctionality). Then, we quantified the species identity effects and strength of interspecific interactions to identify the “best” and “worst” species composition for multifunctionality. Finally, we evaluated the real-world frequency of occurrence of best and worst mixtures, using harmonized data from multiple national forest inventories. 3. The most productive tree species combinations also tended to express relatively high multifunctionality, although we found a relatively wide range of compositions with high- or low-average multifunctionality for the same level of productivity. Monocultures were distributed among the highest as well as the lowest performing compositions. The variation in functioning between compositions was generally driven by differences in the performance of the component species and, to a lesser extent, by particular interspecific interactions. Finally, we found that the most frequent species compositions in inventory data were monospecific stands and that the most common compositions showed below-average multifunctionality and productivity. 4. Synthesis and applications. Species identity and composition effects are essential to the development of high-performing production systems, for instance in forestry and agriculture. They therefore deserve great attention in the analysis and design of functional biodiversity studies if the aim is to inform ecosystem management. A management focus on tree productivity does not necessarily trade-off against other ecosystem functions; high productivity and multifunctionality can be combined with an informed selection of tree species and species combinations.

ano.nymous@ccsd.cnrs.fr.invalid (Lander Baeten) 29 Dec 2024

https://hal.inrae.fr/hal-02629130v1

[hal-02372828] Soil N2O, CH4, and CO2 Fluxes in Forest, Grassland, and Tillage/No-Tillage Croplands in French Guiana (Amazonia)

The agricultural landscape of French Guiana (Amazonia) is expected to undergo substantial change as a result of rapid population growth in the region. Such changes in the landscape will lead to the conversion of tropical forests into land destined for agricultural use. Little information is available on the effect of different agricultural systems on greenhouse gas (GHG) emissions in French Guiana. For our experiment, two hectares of forest were cleared, without the use of fire, at the Combi experimental site (sandy-clayey Ferralsol) at the end of 2008. After one year with legume and grass cover, the site was modified to include the following three fertilized agricultural systems: (1) Grassland (Brachiaria ruziziensis, mowed), (2) cropland (maize/soybean rotation) with disc tillage, and (3) cropland (maize/soybean rotation) with no-tillage in direct seeding. Soil N2O, CH4, and CO2 fluxes were measured with dark chambers from May 2011 to November 2014. Our results show that grassland was a significantly lower emitter of N2O but a significantly higher emitter of CH4 compared to the two cropland systems studied. We did not observe significant differences between the two cropland systems for N2O and CH4 fluxes. Measurements of the net ecosystem CO2 exchange would be useful to better compare the role of different agricultural systems as a source of GHGs.

ano.nymous@ccsd.cnrs.fr.invalid (Caroline Petitjean) 26 May 2020

https://agroparistech.hal.science/hal-02372828v1

[hal-02622295] Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

Oaks are dominant forest tree species widely distributed across the Northern Hemisphere, where they constitute natural resources of economic, ecological, social and historical value. Hybridisation and adaptive introgression have long been thought to be major drivers of their ecological success. Therefore, the maintenance of species barriers remains a key question, given the extent of interspecific gene flow. In this study, we made use of the tremendous genetic variation among four European white oak species (31 million single nucleotide polymorphisms (SNPs)) to infer the evolutionary history of these species, study patterns of genetic differentiation and identify reproductive barriers. We first analysed the ecological and historical relationships among these species and inferred a long-term strict isolation followed by a recent and extensive postglacial contact using approximate Bayesian computation. Assuming this demographic scenario, we then performed backward simulations to generate the expected distributions of differentiation under neutrality to scan their genomes for reproductive barriers. We finally identified important intrinsic and ecological functions driving the reproductive isolation. We discussed the importance of identifying the genetic basis for the ecological preferences between these oak species and its implications for the renewal of European forests under global warming.

ano.nymous@ccsd.cnrs.fr.invalid (Thibault Leroy) 07 Dec 2023

https://hal.inrae.fr/hal-02622295v1

[hal-02432407] Large hydraulic safety margins protect Neotropical canopy rainforest tree species against hydraulic failure during drought

Abundant Neotropical canopy-tree species are more resistant to drought-induced branch embolism than what is currently admitted. Large hydraulic safety margins protect them from hydraulic failure under actual drought conditions.ContextXylem vulnerability to embolism, which is associated to survival under extreme drought conditions, is being increasingly studied in the tropics, but data on the risk of hydraulic failure for lowland Neotropical rainforest canopy-tree species, thought to be highly vulnerable, are lacking.AimsThe purpose of this study was to gain more knowledge on species drought-resistance characteristics in branches and leaves and the risk of hydraulic failure of abundant rainforest canopy-tree species during the dry season.MethodsWe first assessed the range of branch xylem vulnerability to embolism using the flow-centrifuge technique on 1-m-long sun-exposed branches and evaluated hydraulic safety margins with leaf turgor loss point and midday water potential during normal- and severe-intensity dry seasons for a large set of Amazonian rainforest canopy-tree species.ResultsTree species exhibited a broad range of embolism resistance, with the pressure threshold inducing 50% loss of branch hydraulic conductivity varying from − 1.86 to − 7.63 MPa. Conversely, we found low variability in leaf turgor loss point and dry season midday leaf water potential, and mostly large, positive hydraulic safety margins.ConclusionsRainforest canopy-tree species growing under elevated mean annual precipitation can have high resistance to embolism and are more resistant than what was previously thought. Thanks to early leaf turgor loss and high embolism resistance, most species have a low risk of hydraulic failure and are well able to withstand normal and even severe dry seasons.

ano.nymous@ccsd.cnrs.fr.invalid (Camille Ziegler) 14 Dec 2020

https://hal.umontpellier.fr/hal-02432407v1

[hal-02626083] Genetic differentiation in functional traits among European sessile oak populations

The vulnerability of forest species and tree populations to climate change is related to the exposure of the ecosystem to extreme climatic conditions and to the adaptive capacity of the population to cope with those conditions. Adaptive capacity is a relatively under-researched topic within the forest science community and there is an urgent need to understand to what extent particular combinations of traits have been shaped by natural selection under climatic gradients, potentially resulting in adaptive multi-trait associations. Thus, our aim was to quantify genetic variation in several leaf and woody traits that may contribute to multi-trait associations in which intraspecific variation could represent a source for species adaptation to climate change. A multi-trait approach was performed using nine Quercus petraea provenances originating from different locations that cover most of the species' distribution range over Europe and that were grown in a common garden. Multiple adaptive differences were observed between oak provenances but also some evolutionary stasis. Also, our results revealed higher genetic differentiation in traits related to phenology and growth than in those related to xylem anatomy, physiology and hydraulics for which no genetic differentiation was observed. The multiple associations between those traits and climate variables resulting from multivariate and path analyses suggest a multi-trait association largely involving phenological and growth traits for Quercus petraea. © The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

ano.nymous@ccsd.cnrs.fr.invalid (Jose Manuel Torres Ruiz) 26 May 2020

https://hal.inrae.fr/hal-02626083v1

[hal-02149053] Water and nutrient uptake capacity of leaf-absorbing trichomes vs. roots in epiphytic tank bromeliads

The water and nutrient uptake mechanisms used by vascular epiphytes have been the subject of a few studies. While leaf absorbing trichomes (LATs) are the main organ involved in resource uptake by bromeliads, little attention has been paid to the absorbing role of epiphytic bromeliad roots. This study investigates the water and nutrient uptake capacity of LATs vs. roots in two epiphytic tank bromeliads Aechmea aquilega and Lutheria splendens. The tank and/or the roots of bromeliads were watered, or not watered at all, in different treatments. We show that LATs and roots have different functions in resource uptake in the two species, which we mainly attributed to dissimilarities in carbon acquisition and growth traits (e.g., photosynthesis, relative growth rate, non-structural carbohydrates, malate), to water relation traits (e.g., water and osmotic potential, relative water content, hydrenchyma thickness) and nutrient uptake (e.g., 15N-labelling). While the roots of A. aquilega did contribute to water and nutrient uptake, the roots of L. splendens were less important than the role played by the LATs in resource uptake. We also provide evidence for a synergistic effect of combined watering of tank and root in the Bromelioideae species. These results call for a more complex interpretation of LATs vs. roots in resource uptake in bromeliads.

ano.nymous@ccsd.cnrs.fr.invalid (Céline Leroy) 22 Oct 2021

https://hal.umontpellier.fr/hal-02149053v1

[hal-02625278] The effect of stumpage prices on large-area forest growth forecasts based on socio-ecological models

Forest ecosystems are typical examples of socio-ecological systems. However, in terms of modelling, the social aspect has been given far less attention than the ecological aspect. In this study, we modelled the impact of eco- nomic and social factors on the occurrence of harvesting. This harvest model was then integrated into an individual- based model of forest growth designed for large-area forec asts. The resulting s ocio-ecological model was then used to produce volume predictions for two regions of France. Among the economic factors, the annual stumpage prices in interaction with the species proved to be a signi fi cant predictor of harvest occurrence. Simulating different stum- page price evolutions made it possible to predict supply curves for the two regions. Projections until 2060 showed that increases in stumpage prices will be detrimental to st anding volumes in both regions. Integrating the demand for wood products into such socio-ecological models in forestry would be a major improvement.

ano.nymous@ccsd.cnrs.fr.invalid (Mathieu Fortin) 26 May 2020

https://hal.inrae.fr/hal-02625278v1

[hal-02118104] Are 40 years better than 55 ? An analysis of the reduction of forest rotation to cope with drought events in a Douglas fir stand

Key message : Reduction of forest rotation is analyzed as a potential adaptation strategy for a Douglas fir stand to cope with drought-induced risk of forest decline. The methodology combines a water balance modeling and an economic approach. Results show that, from an economic perspective, adaptation (immediate or delayed) is always better than the absence of adaptation. Context : Reduction of rotation length emerges as a potential adaptation strategy to cope with climate change. Aim : The study aims to address the reduction of rotation length to deal with the drought-induced risk of forest decline taking a multidisciplinary approach. Methods : We estimate probabilities and impacts of drought events quantified by water balance modeling and we evaluate, from an economic point of view, the reduction of rotation length to cope with the drought-induced risk of forest decline. We compare three different adaptation strategies at the economic level: absence of adaptation, immediate adaptation, and delayed adaptation. Results : Results suggest that immediate reduction of rotation length is associated with the best economic return, followed by delayed adaptation and, finally, by the absence of adaptation. This result is sensitive to the level of timber loss in the event of drought occurrence. If the loss of timber volume is higher than 48%, then delayed adaptation may be preferable to immediate adaptation. Conclusion : Beyond the specificities of the case study, this paper proposes a multidisciplinary approach to address adaptation strategies.

ano.nymous@ccsd.cnrs.fr.invalid (Nathalie Bréda) 06 Apr 2020

https://hal.science/hal-02118104v1

[hal-02181076] Air temperature optima of vegetation productivity across global biomes.

The global distribution of the optimum air temperature for ecosystem-level gross primary productivity ([Formula: see text]) is poorly understood, despite its importance for ecosystem carbon uptake under future warming. We provide empirical evidence for the existence of such an optimum, using measurements of in situ eddy covariance and satellite-derived proxies, and report its global distribution. [Formula: see text] is consistently lower than the physiological optimum temperature of leaf-level photosynthetic capacity, which typically exceeds 30 °C. The global average [Formula: see text] is estimated to be 23 ± 6 °C, with warmer regions having higher [Formula: see text] values than colder regions. In tropical forests in particular, [Formula: see text] is close to growing-season air temperature and is projected to fall below it under all scenarios of future climate, suggesting a limited safe operating space for these ecosystems under future warming.

ano.nymous@ccsd.cnrs.fr.invalid (Mengtian Huang) 11 Jul 2019

https://hal.science/hal-02181076v1

[hal-02391010] Life on the Edge: Ecological Genetics of a High Arctic Insect Species and Its Circumpolar Counterpart

Arctic ecosystems are subjected to strong environmental constraints that prevent both the colonization and development of many organisms. In Svalbard, few aphid species have established permanent populations. These high arctic aphid species have developed peculiar life-history traits such as shortened life cycles and reduced dispersal capacities. Here, we present data on the distribution and population genetics of Acyrthosiphon svalbardicum in Spitsbergen, the main island of the Svalbard archipelago, and compared its genetic structure with that of its close relative Acyrthosiphon brevicorne, sampled in the top of Scandinavian mainland. We found that A. svalbardicum is common butheterogeneously distributed along the west coast of Spitsbergen. We recorded this species up to 7912’, which constitutes the northernmost location for any aphid. Genetic structure examined using microsatellite markers showed more pronounced spatial dierentiation in A. svalbardicum than in A. brevicorne populations, presumably due to reduced dispersal capacities in the former species. Although populations of A. brevicorne and A. svalbardicum were well-delineated at nuclear loci, they shared similar cytoplasmic DNA haplotypes as revealed by sequence analysis of two DNA barcodes. These results raise questions about whether these two taxa are dierent species, and the colonizationsources and history of the Svalbard archipelago by A. svalbardicum

ano.nymous@ccsd.cnrs.fr.invalid (Jean-Christophe Simon) 03 Dec 2019

https://institut-agro-rennes-angers.hal.science/hal-02391010v1

[hal-02561718] On the need to consider wood formation processes in global vegetation models and a suggested approach

Abstract• Key messageDynamic global vegetation models are key tools for interpreting and forecasting the responses of terrestrial ecosystems to climatic variation and other drivers. They estimate plant growth as the outcome of the supply of carbon through photosynthesis. However, growth is itself under direct control, and not simply controlled by the amount of available carbon. Therefore predictions by current photosynthesis-driven models of large increases in future vegetation biomass due to increasing concentrations of atmospheric CO2may be significant over-estimations. We describe how current understanding of wood formation can be used to reformulate global vegetation models, with potentially major implications for their behaviour.

ano.nymous@ccsd.cnrs.fr.invalid (Andrew D. Friend) 04 May 2020

https://hal.science/hal-02561718v1

[hal-02184243] Geographical adaptation prevails over species-specific determinism in trees' vulnerability to climate change at Mediterranean rear-edge forests

Climate change may reduce forest growth and increase forest mortality, which is connected to high carbon costs through reductions in gross primary production and net ecosystem exchange. Yet, the spatiotemporal patterns of vulnerability to both short-term extreme events and gradual environmental changes are quite uncertain across the species' limits of tolerance to dryness. Such information is fundamental for defining ecologically relevant upper limits of species tolerance to drought and, hence, to predict the risk of increased forest mortality and shifts in species composition. We investigate here to what extent the impact of short- and long-term environmental changes determines vulnerability to climate change of three evergreen conifers (Scots pine, silver fir, Norway spruce) and two deciduous hardwoods (European beech, sessile oak) tree species at their southernmost limits of distribution in the Mediterranean Basin. Finally, we simulated future forest growth under RCP 2.6 and 8.5 emission scenarios using a multispecies generalized linear mixed model. Our analysis provides four key insights into the patterns of species' vulnerability to climate change. First, site climatic marginality was significantly linked to the growth trends: increasing growth was related to less climatically limited sites. Second, estimated species-specific vulnerability did not match their a priori rank in drought tolerance: Scots pine and beech seem to be the most vulnerable species among those studied despite their contrasting physiologies. Third, adaptation to site conditions prevails over species-specific determinism in forest response to climate change. And fourth, regional differences in forests vulnerability to climate change across the Mediterranean Basin are linked to the influence of summer atmospheric circulation patterns, which are not correctly represented in global climate models. Thus, projections of forest performance should reconsider the traditional classification of tree species in functional types and critically evaluate the fine-scale limitations of the climate data generated by global climate models.

ano.nymous@ccsd.cnrs.fr.invalid (Isabel Dorado-Liñán) 15 Jul 2019

https://hal.science/hal-02184243v1

[hal-02627690] From xylogenesis to tree rings: wood traits to investigate tree response to environmental changes

It is noteworthy that the largest part of global vegetation biomass depends on a thin layer of cells: the vascular cambium. Understanding the wood formation processes and relationships with environmental factors is a crucial and timely research question requiring interdisciplinary efforts, also to upscale the information gained and to evaluate implications for tree growth and forest productivity. We provide an overview of wood formation processes up to tree-ring development, bearing in mind that the combined action of intrinsic factors and environmental drivers determines the anatomical traits of a tree ring formed at a specific time and position within the tree’s architecture. After briefly reviewing intrinsic factors, we focus attention on environmental drivers highlighting how a correct interpretation of environmental signals in tree rings must be grounded in a deep knowledge of xylogenesis and consequent wood anatomical traits. We provide guidelines on novel methods and approaches recently developed to study xylem formation. We refer to existing literature on established techniques for retrospective analyses in tree-ring series of anatomical and isotopic traits, to assess long-term ecophysiological responses to environmental variations, also giving advice on possible bias because of interand within-tree variability. Finally, we highlight that, once the temporal axis of intra-annual tree-ring variability of xylem traits is established by xylogenesis analysis, a multidisciplinary approach linking classical dendro-ecology, wood functional traits (dendro-anatomy) and eco-physiology (here focusing on dendro-isotopes) allows a better interpretation of past environmental events hidden in tree rings, and more reliable forecasts of wood growth in response to climate change.

ano.nymous@ccsd.cnrs.fr.invalid (Veronica de Micco) 26 May 2020

https://hal.inrae.fr/hal-02627690v1

[hal-02311392] The functional trait spectrum of European temperate grasslands

Questions What is the functional trait variation of European temperate grasslands and how does this reflect global patterns of plant form and function? Do habitat specialists show trait differentiation across habitat types? Location Europe. Methods We compiled 18 regeneration and non-regeneration traits for a continental species pool consisting of 645 species frequent in five grassland types. These grassland types are widely distributed in Europe but differentiated by altitude, soil bedrock and traditional long-term management and disturbance regimes. We evaluated the multivariate trait space of this entire species pool and compared multi-trait variation and mean trait values of habitat specialists grouped by grassland type. Results The first dimension of the trait space accounted for 23% of variation and reflected a gradient between fast-growing and slow-growing plants. Plant height and SLA contributed to both the first and second ordination axes. Regeneration traits mainly contributed to the second and following dimensions to explain 56% of variation across the first five axes. Habitat specialists showed functional differences between grassland types mainly through non-regeneration traits. Conclusions The trait spectrum of plants dominating European temperate grasslands is primarily explained by growth strategies which are analogous to the trait variation observed at the global scale, and secondly by regeneration strategies. Functional differentiation of habitat specialists across grassland types is mainly related to environmental filtering linked with altitude and disturbance. This filtering pattern is mainly observed in non-regeneration traits, while most regeneration traits demonstrate multiple strategies within the same habitat type.

ano.nymous@ccsd.cnrs.fr.invalid (Emma Ladouceur) 26 May 2020

https://hal.science/hal-02311392v1

[hal-02625305] Chilling and forcing temperatures interact to predict the onset of wood formation in Northern Hemisphere conifers

The phenology of wood formation is a critical process to consider for predicting how trees from the temperate and boreal zones may react to climate change. Compared to leaf phenology, however, the determinism of wood phenology is still poorly known. Here, we compared for the first time three alternative ecophysiological model classes (threshold models, heat-sum models and chilling-influenced heat-sum models) and an empirical model in their ability to predict the starting date of xylem cell enlargement in spring, for four major Northern Hemisphere conifers (Larix decidua, Pinus sylvestris, Picea abies and Picea mariana). We fitted models with Bayesian inference to wood phenological data collected for 220 site-years over Europe and Canada. The chilling-influenced heat-sum model received most support for all the four studied species, predicting validation data with a 7.7-day error, which is within one day of the observed data resolution. We conclude that both chilling and forcing temperatures determine the onset of wood formation in Northern Hemisphere conifers. Importantly, the chilling-influenced heat-sum model showed virtually no spatial bias whichever the species, despite the large environmental gradients considered. This suggests that the spring onset of wood formation is far less affected by local adaptation than by environmentally driven plasticity. In a context of climate change, we therefore expect rising winter-spring temperature to exert ambivalent effects on the spring onset of wood formation, tending to hasten it through the accumulation of forcing temperature, but imposing a higher forcing temperature requirement through the lower accumulation of chilling.

ano.nymous@ccsd.cnrs.fr.invalid (Nicolas Delpierre) 04 Apr 2024

https://hal.inrae.fr/hal-02625305v1

[hal-02628795] Acclimation and adaptation components of the temperature dependence of plant photosynthesis at the global scale.

The temperature response of photosynthesis is one of the key factors determining predicted responses to warming in global vegetation models (GVMs). The response may vary geographically, owing to genetic adaptation to climate, and temporally, as a result of acclimation to changes in ambient temperature. Our goal was to develop a robust quantitative global model representing acclimation and adaptation of photosynthetic temperature responses. We quantified and modelled key mechanisms responsible for photosynthetic temperature acclimation and adaptation using a global dataset of photosynthetic CO2 response curves, including data from 141 C3 species from tropical rainforest to Arctic tundra. We separated temperature acclimation and adaptation processes by considering seasonal and common‐garden datasets, respectively. The observed global variation in the temperature optimum of photosynthesis was primarily explained by biochemical limitations to photosynthesis, rather than stomatal conductance or respiration. We found acclimation to growth temperature to be a stronger driver of this variation than adaptation to temperature at climate of origin. We developed a summary model to represent photosynthetic temperature responses and showed that it predicted the observed global variation in optimal temperatures with high accuracy. This novel algorithm should enable improved prediction of the function of global ecosystems in a warming climate.

ano.nymous@ccsd.cnrs.fr.invalid (Dushan P Kumarathunge) 27 May 2020

https://hal.inrae.fr/hal-02628795v1

[hal-02629182] Phenology of wood formation in larch (Larix decidua Mill.) trees growing along a 1000-m elevation gradient in the French Southern Alps

center dot Key message Spring temperature increase is the main driver of larch tree wood formation onset along a 1000-m elevation gradient in the Southern Alps, while its cessation is more probably controlled by water stress at the lowest elevation and photoperiod at higher ones. center dot Context The survival of perennial plants depends on their adaptation to changing environment and specially temperature, which in trees is notably implemented through wood formation process. center dot Aims Our main objective is to understand how the phenology of wood formation is related to environmental factors and to temperature in particular. center dot Methods We monitored the xylogenesis of 60 larch trees, distributed in four stands along an elevation gradient of 1000 m in the French Southern Alps. center dot Results Cambial activity started around mid-May at the lowest site (1350 m) and around mid-June at the highest one (2300 m), showing a delay of 5.4 days per degrees C. The onset of wall-thickening and mature phenophases followed the same linear trend with a delay of 5.2 and 3 days per degrees C, respectively. Phenophase cessations followed a parabolic trend with trees from the lowest site finishing their growth the first, while those from 1700 m finished the last. Our results show that the onset of xylem formation is mainly driven by spring temperature increase, while its cessation is more related to photoperiod, with water shortage being able to hasten it. center dot Conclusion Future climatic changes will most probably increase growing season length (but not necessarily wood production) and shift upwards the optimal elevation for larch growth in the Southern Alps.

ano.nymous@ccsd.cnrs.fr.invalid (Seyedeh Masoumeh Saderi) 27 May 2020

https://hal.inrae.fr/hal-02629182v1

[hal-02356964] Alpha diversity of vascular plants in European forests

Aim. The former continental‐scale studies modelled coarse‐grained plant species‐richness patterns (gamma diversity). Here we aim to refine this information for European forests by (a) modelling the number of vascular plant species that co‐occur in local communities (alpha diversity) within spatial units of 400 m2; and (b) assessing the factors likely determining the observed spatial patterns in alpha diversity. Location. Europe roughly within 12°W–30°E and 35–60°N. Taxon. Vascular plants. Methods. The numbers of co‐occurring vascular plant species were counted in 73,134 georeferenced vegetation plots. Each plot was classified by an expert system into deciduous broadleaf, coniferous or sclerophyllous forest. Random Forest models were used to map and explain spatial patterns in alpha diversity for each forest type separately using 19 environmental, land‐use and historical variables. Results. Our models explained from 51.0% to 70.9% of the variation in forest alpha diversity. The modelled alpha‐diversity pattern was dominated by a marked gradient from species‐poor north‐western to species‐rich south‐eastern Europe. The most prominent richness hotspots were identified in the Calcareous Alps and adjacent north‐western Dinarides, the Carpathian foothills in Romania and the Western Carpathians in Slovakia. Energy‐related factors, bedrock types and terrain ruggedness were identified as the main variables underlying the observed richness patterns. Alpha diversity increases especially with temperature seasonality in deciduous broadleaf forests, on limestone bedrock in coniferous forests and in areas with low annual actual evapotranspiration in sclerophyllous forests. Main conclusions. We provide the first predictive maps and analyses of environmental factors driving the alpha diversity of vascular plants across European forests. Such information is important for the general understanding of European biodiversity. This study also demonstrates a high potential of vegetation‐plot databases as sources for robust estimation of the number of vascular plant species that co‐occur at fine spatial grains across large areas.

ano.nymous@ccsd.cnrs.fr.invalid (Martin Večeřa) 18 Nov 2019

https://hal.science/hal-02356964v1

[hal-02501278] Wood formation and tree adaptation to climate

This special issue of Annals of Forest Science compiles ten papers on “Wood formation and tree adaptation to climate”, which were presented at “Le Studium” International Conference in May 2018 in Orléans (France). These papers present observational, experimental and modelling studies investigating the influence of climatic changes on tree growth from the hour to the century, and from the cell to the landscape

ano.nymous@ccsd.cnrs.fr.invalid (Cyrille Rathgeber) 06 Mar 2020

https://hal.science/hal-02501278v1

[hal-02154592] Accelerated flowering time reduces lifetime water use without penalizing reproductive performance in Arabidopsis

Natural selection driven by water availability has resulted in considerable variation for traits associated with drought tolerance and leaf‐level water‐use efficiency (WUE). In Arabidopsis, little is known about the variation of whole‐plant water use (PWU) and whole‐plant WUE (transpiration efficiency). To investigate the genetic basis of PWU, we developed a novel proxy trait by combining flowering time and rosette water use to estimate lifetime PWU. We validated its usefulness for large‐scale screening of mapping populations in a subset of ecotypes. This parameter subsequently facilitated the screening of water use and drought tolerance traits in a recombinant inbred line population derived from two Arabidopsis accessions with distinct water‐use strategies, namely, C24 (low PWU) and Col‐0 (high PWU). Subsequent quantitative trait loci mapping and validation through near‐isogenic lines identified two causal quantitative trait loci, which showed that a combination of weak and nonfunctional alleles of the FRIGIDA (FRI) and FLOWERING LOCUS C (FLC) genes substantially reduced plant water use due to their control of flowering time. Crucially, we observed that reducing flowering time and consequently water use did not penalize reproductive performance, as such water productivity (seed produced per unit of water transpired) improved. Natural polymorphisms of FRI and FLC have previously been elucidated as key determinants of natural variation in intrinsic WUE (δ13C). However, in the genetic backgrounds tested here, drought tolerance traits, stomatal conductance, δ13C. and rosette water use were independent of allelic variation at FRI and FLC, suggesting that flowering is critical in determining lifetime PWU but not always leaf‐level traits.

ano.nymous@ccsd.cnrs.fr.invalid (John n. Ferguson) 12 Jun 2019

https://hal.science/hal-02154592v1

[hal-02052715] Compositional response of Amazon forests to climate change

Most of the planet's diversity is concentrated in the tropics, which includes many regions undergoing rapid climate change. Yet, while climate-induced biodiversity changes are widely documented elsewhere, few studies have addressed this issue for lowland tropical ecosystems. Here we investigate whether the floristic and functional composition of intact lowland Amazonian forests have been changing by evaluating records from 106 long-term inventory plots spanning 30 years. We analyse three traits that have been hypothesized to respond to different environmental drivers (increase in moisture stress and atmospheric CO2 concentrations): maximum tree size, biogeographic water-deficit affiliation and wood density. Tree communities have become increasingly dominated by large-statured taxa, but to date there has been no detectable change in mean wood density or water deficit affiliation at the community level, despite most forest plots having experienced an intensification of the dry season. However, among newly recruited trees, dry-affiliated genera have become more abundant, while the mortality of wet-affiliated genera has increased in those plots where the dry season has intensified most. Thus, a slow shift to a more dry-affiliated Amazonia is underway, with changes in compositional dynamics (recruits and mortality) consistent with climate-change drivers, but yet to significantly impact whole-community composition. The Amazon observational record suggests that the increase in atmospheric CO2 is driving a shift within tree communities to large-statured species and that climate changes to date will impact forest composition, but long generation times of tropical trees mean that biodiversity change is lagging behind climate change.

ano.nymous@ccsd.cnrs.fr.invalid (Adriane Esquivel-Muelbert) 28 Feb 2019

https://hal.umontpellier.fr/hal-02052715v1

[hal-02154543] Climatic Suitability Derived from Species Distribution Models Captures Community Responses to an Extreme Drought Episode

The differential responses of co-occurring species in rich communities to climate changeparticularly to drought episodeshave been fairly unexplored. Species distribution models (SDMs) are used to assess changes in species suitability under environmental shifts, but whether they can portray population and community responses is largely undetermined, especially in relation to extreme events. Here we studied a shrubland community in SE Spain because this region constitutes an ecotone between the Mediterranean biome and subtropical arid areas, and it has recently suffered its driest hydrological year on record. We used four different modeling algorithms (Mahalanobis distance, GAM, BRT, and MAXENT) to estimate species' climatic suitability before (1950-2000) and during the extreme drought. For each SDM, we related species' climatic suitability with their remaining green canopy as a proxy for species resistance to drought. We consistently found a positive correlation between remaining green canopy and species' climatic suitability before the event. This relationship supports the hypothesis of a higher vulnerability of populations living closer to their species' limits of aridity tolerance. Contrastingly, climatic suitability during the drought did not correlate with remaining green canopy, likely because the exceptional episode led to almost zero suitability values. Overall, our approach highlights climatic niche modeling as a robust approach to standardizing and comparing the behavior of different co-occurring species facing strong climatic fluctuations. Although many processes contribute to resistance to climatic extremes, the results confirm the relevance of populations' position in the species' climatic niche for explaining sensitivity to climate change.

ano.nymous@ccsd.cnrs.fr.invalid (Gerard Sapes) 12 Jun 2019

https://hal.science/hal-02154543v1

[hal-02623598] Altered stomatal dynamics induced by changes in irradiance and vapour-pressure deficit under drought: impacts on the whole-plant transpiration efficiency of poplar genotypes

Recent findings were able to show significant variability of stomatal dynamics between species, but not much is known about factors influencing stomatal dynamics and its consequences on biomass production, transpiration and water-use efficiency (WUE). We assessed the dynamics of stomatal conductance (g(s)) to a change of irradiance or vapour-pressure deficit (VPD) in two Populus euramericana and two Populus nigra genotypes grown under control and drought conditions. Our objectives were to determine the diversity of stomatal dynamics among poplar genotypes, and if soil water deficit can alter it. Physiological and morphological factors were investigated to find their potential links with stomatal morphology, WUE and its components at the whole-plant level. We found significant genotypic variability of g(s) dynamics to both irradiance and VPD. Genotypes with faster stomatal dynamics were correlated with higher stomatal density and smaller stomata, and the implications of these correlations are discussed. Drought slowed g(s) dynamics, depending on genotype and especially during stomatal closing. This finding is contrary to previous research on more drought-tolerant species. Independently of the treatment, faster stomatal dynamics were negatively correlated with daily whole-plant transpiration, presenting new evidence of a previously hypothesized contribution of stomatal dynamics to whole-plant water use.

ano.nymous@ccsd.cnrs.fr.invalid (Maxime Durand) 26 May 2020

https://hal.inrae.fr/hal-02623598v1

[hal-02154587] Deciphering the main determinants of O3 tolerance in Euramerican poplar genotypes

Tropospheric ozone (O-3) is the main secondary pollutant and considered to be the most damaging for growth and productivity. O-3 is well known to induce oxidative stress and Reactive Oxygen Species accumulation in leaf tissues. Several mechanisms have been suggested to enable trees to cope with such stress; however, their relative contribution to O-3 tolerance is still unclear. Here, tell Euramerican poplar genotypes (Populus dettoicles x nigra) were investigated regarding their response to 120 ppb of O-3 for 3 weeks in order to determine main mechanisms and identify the key traits and strategies linked to a better tolerance to O-3 induced oxidative stress. Results showed that ascorbate peroxidase and ascorbate regeneration through monodehydroascorbate reductase are the main determinants of O-3 tolerance in Euramerican poplar, in protecting photosynthesis capacity from oxidative stress and therefore, maintaining growth and productivity. Besides, slomatal closure was harmful in sensitive genotypes, suggesting that avoiding strategy can be further deleterious under chronic ozone. Finally, O-3-induced early senescence appeared essential when up scaling leaf level mechanistic response to whole plant productivity, in line tuning resource reallocation and photosynthesis area.

ano.nymous@ccsd.cnrs.fr.invalid (Anthony Gandin) 12 Jun 2019

https://hal.science/hal-02154587v1

[hal-03328388] Un outil en ligne pour accompagner le choix des essences forestières dans un contexte de changement climatique.

[...]

ano.nymous@ccsd.cnrs.fr.invalid (Sophie Bertin) 30 Aug 2021

https://hal.science/hal-03328388v1

[hal-02154444] Biomechanical control of beech pole verticality (Fagus sylvatica) before and after thinning: theoretical modelling and ground-truth data using terrestrial LiDAR

Premise of the Study Thinning is a frequent disturbance in managed forests, especially to increase radial growth. Due to buckling and bending risk associated with height and mass growth, tree verticality is strongly constrained in slender trees growing in dense forests and poor light conditions. Tree verticality is controlled by uprighting movements implemented from local curvatures induced by wood maturation stresses and/or eccentric radial growth. This study presents the first attempt to compare the real uprighting movements in mature trees using a theoretical model of posture control. Methods Stem lean and curvature were measured by Terrestrial LiDAR Scanner (TLS) technology before and 6 years after thinning and compared to unthinned control poles. Measures for several tree and wood traits were pooled together to implement a widely used biomechanical model of tree posture control. Changes in observed stem lean were then compared with the model predictions, and discrepancies were reviewed. Key Results Even under a highly constrained environment, most control poles were able to counterbalance gravitational curvature and avoid sagging. Thinning stimulated uprighting movements. The theoretical uprighting curvature rate increased just after thinning, then slowed after 2 years, likely due to the stem diameter increase. The biomechanical model overestimated the magnitude of uprighting. Conclusions Most suppressed beech poles maintain a constant lean angle, and uprighting movements occur after thinning, indicating that stem lean is plastic in response to light conditions. Acclimation of posture control to other changes in growth condition should be investigated, and lean angles should be measured in forest inventories as an indicator of future wood quality.

ano.nymous@ccsd.cnrs.fr.invalid (Estelle Noyer) 12 Jun 2019

https://hal.science/hal-02154444v1

[hal-02019962] Water-stressed or not, the mechanical acclimation is a priority requirement for trees

Key messagePeriodic bending of young poplars increase the wood production whatever their hydric status; especially in the most highly stressed zones; improving the mechanical behaviour of the stem.AbstractThe ability of trees to acclimate the building of their structures to windy conditions under various hydric conditions is essential in the context of the predicted climate changes. In this study, we investigated the biomechanical responses of young poplar trees to periodic controlled bending stimulations that mimic the mechanical effect of trees growing under windy conditions. This treatment was conducted for 5months in well-watered conditions or under hydric stress. Results demonstrate the high impact of thigmomorphogenesis on growth processes, even under the water shortage. While axial growth was reduced by mechanical stimulations and hydric stress, radial growth was strongly increased by the periodic stem bending. The secondary growth was preferentially increased in the direction of highest longitudinal strains leading to the ovalisation of the cross-section. This ovalisation yielded 16%, regardless the hydric condition and generated a huge increase of the bending rigidity of the trees (+212%). Further, we observed a differential growth between the side growing under tension and the side growing under compression. A Finite Element model was built to investigate the mechanical benefits of the anisotropic cross-section shapes. This FE model enlightened the modulation of the spatial stress distribution that lead to a reduction of the stress in the weakest zones of the trunk; suggesting an improvement of the mechanical safety margin of wood. Thigmomorphogenesis acclimation appears as a complex and costly, but necessary process for the long-term mechanical support of the trees, even under hydric stress conditions.

ano.nymous@ccsd.cnrs.fr.invalid (Benjamin Niez) 14 Feb 2019

https://hal.science/hal-02019962v1

[hal-02624570] Antioxidative responses of three oak species under ozone and water stress conditions

Plants are frequently exposed to adverse environmental conditions such as drought and ozone (O-3). Under these conditions, plants can survive due to their ability to adjust their metabolism. The aim of the present study was to compare the detoxification mechanisms of three oak species showing different O-3 sensitivity and water use strategy. Two-year-old seedlings of Quercus ilex, Q. pubescens and Q. robur were grown under the combination of three levels of O-3 (1.0, 1.2 and 1.4 times the ambient O-3 concentration) and three levels of water availability (on average 100, 80 and 42% of field capacity i.e. well-watered, moderate drought and severe drought, respectively) in an O-3 Free Air Controlled Exposure facility. Ozone and drought induced the accumulation of reactive oxygen species (ROS) and this phenomenon was species-specific. Sometimes, ROS accumulation was not associated with membrane injury suggesting that several antioxidative defence mechanisms inhibited or alleviated the oxidative damage. Both O-3 and drought increased total carotenoids that were able to prevent the peroxidation action by free radicals in Q. ilex, as confirmed by unchanged malondialdehyde by-product values. The concomitant decrease of total flavonoids may be related to the consumption of these compounds by the cell to inhibit the accumulation of hydrogen peroxide. Unchanged total phenols confirmed that Q. ilex has a superior ability to counteract oxidative conditions. Similar responses were found in Q. pubescens, although the negative impact of both factors was less efficiently faced than in the sympatric Q. ilex. In Q. robur, high O-3 concentrations and severe drought induced a partial rearrangement of the phenylpropanoid pathways. These antioxidative mechanisms were not able to protect the cell structure (as confirmed by ROS accumulation) suggesting that Q. robur showed a lower degree of tolerance than the other two species.

ano.nymous@ccsd.cnrs.fr.invalid (Elisa Pellegrini) 26 May 2020

https://hal.inrae.fr/hal-02624570v1

[hal-02384139] Fructification du Hêtre et des Chênes en France : rôle des températures, du pollen et du bilan de carbone et relation avec la croissance des peuplements

Dans cette étude, nous avons analysé les déterminants environnementaux de la variabilité spatiale et temporelle de la fructification des trois espèces feuillues européennes majeures : Quercus robur, Quercus petraea et Fagus sylvatica. Nous avons étudié les relations entre la production de fruits, l’émission de pollen, les ressources carbonées et hydriques et les conditions climatiques sur la période 1994-2007 (14 ans) à partir de 48 peuplements du réseau RENECOFOR. La production moyenne des fruits est de 251 kg/ha/an pour les Chênes et de 174 kg/ha/an pour le Hêtre. Pour le Hêtre, la production suit un rythme bisannuel très net et est synchrone entre les sites. Elle apparaît beaucoup plus variable pour les Chênes sans synchronisme net. Pour les Chênes, la fructification dépend très fortement des conditions thermiques durant la période d’émission du pollen (début avril) confirmant l’hypothèse du synchronisme pollinique pour ces espèces. Pour le Hêtre, la production dépend très fortement des écarts de température estivale entre les années. Pour les deux espèces, les relations entre la production de fruits et les différents déterminants suivent des lois non linéaires avec des forts effets seuil et des interactions complexes. Enfin, pour le Hêtre, la croissance radiale est réduite en cas de forte fructification alors que les années de bonne glandée sont aussi des années de forte croissance pour les Chênes. Les deux espèces présentent donc deux comportements opposés concernant les stratégies d’allocation entre la croissance radiale et la production de fruits.

ano.nymous@ccsd.cnrs.fr.invalid (François F. Lebourgeois) 28 Nov 2019

https://agroparistech.hal.science/hal-02384139v1

[hal-02178457] The impact of prolonged drought on phloem anatomy and phloem transport in young beech trees

Phloem failure has recently been recognized as one of the mechanisms causing tree mortality under drought, though direct evidence is still lacking. We combined 13C pulse-labelling of 8-year-old beech trees (Fagus sylvatica L.) growing outdoors in a nursery with an anatomical study of the phloem tissue in their stems to examine how drought alters carbon transport and phloem transport capacity. For the six trees under drought, predawn leaf water potential ranged from -0.7 to -2.4 MPa, compared with an average of -0.2 MPa in five control trees with no water stress. We also observed a longer residence time of excess 13C in the foliage and the phloem sap in trees under drought compared with controls. Compared with controls, excess 13C in trunk respiration peaked later in trees under moderate drought conditions and showed no decline even after 4 days under more severe drought conditions. We estimated higher phloem sap viscosity in trees under drought. We also observed much smaller sieve-tube radii in all drought-stressed trees, which led to lower sieve-tube conductivity and lower phloem conductance in the tree stem. We concluded that prolonged drought affected phloem transport capacity through a change in anatomy and that the slowdown of phloem transport under drought likely resulted from a reduced driving force due to lower hydrostatic pressure between the source and sink organs.

ano.nymous@ccsd.cnrs.fr.invalid (Masako Dannoura) 09 Jul 2019

https://hal.science/hal-02178457v1

[hal-02177354] New insights into black truffle biology

According to isotopic labeling experiments, most of the carbon used by truffle (Tuber sp.) fruiting bodies to develop underground is provided by host trees, suggesting that trees and truffles are physically connected. However, such physical link between trees and truffle fruiting bodies has never been observed. We discovered fruiting bodies of Tuber aestivum adhering to the walls of a belowground quarry and we took advantage of this unique situation to analyze the physical structure that supported these fruiting bodies in the open air. Observation of transversal sections of the attachment structure indicated that it was organized in ducts made of gleba-like tissue and connected to a network of hyphae traveling across soil particles. Only one mating type was detected by PCR in the gleba and in the attachment structure, suggesting that these two organs are from maternal origin, leaving open the question of the location of the opposite paternal mating type.

ano.nymous@ccsd.cnrs.fr.invalid (Aurélie Deveau) 08 Jul 2019

https://hal.science/hal-02177354v1

[hal-02154544] Highlighting declines of cold-demanding plant species in lowlands under climate warming

High rates of species extinction have been predicted for the next century as a consequence of climate change. Although species range shifts have been widely reported, evidence of changes in species frequency linked to recent climate change is scarce. Moreover, studies have mainly focused on mountainous ecosystems and species. There is thus a clear lack of understanding of the recent changes in species frequencies linked to climate change across their whole range. Using a large forest vegetation-plot database, we investigated changes in cold and warm-demanding forest plant species frequencies between the periods 1914-1987 and 1997-2013 in French lowlands and highlands. Changes in frequencies were assessed for 185 lowland (warm-demanding), 135 sub-montane (intermediate) and 104 montane (cold-demanding) forest plant species. Observed changes were compared to predicted changes derived from species distribution model predictions. The frequency of montane and sub-montane species strongly declined, whereas the frequency of lowland species remained steady in lowland areas. In highlands, the frequency of lowland, sub-montane and montane species increased, remained steady and decreased, respectively. Predicted and observed trends of changes in the frequency of forest plant species were in agreement. These results clearly show that cold-demanding species are currently declining in lowlands that correspond to their warm range margins, whereas warm-demanding species are expanding in highlands that correspond to their cold range margins. These trends can be seen as early signs of future regional extinction and reshuffling of the spatial presence of species due to climate warming.

ano.nymous@ccsd.cnrs.fr.invalid (Emilien Kuhn) 12 Jun 2019

https://hal.science/hal-02154544v1

[hal-02178452] Drought impacts on tree phloem

On-going climate change is increasing the risk of drought stress across large areas worldwide. Such drought events decrease ecosystem productivity and have been increasingly linked to tree mortality. Understanding how trees respond to water shortage is key to predicting the future of ecosystem functions. Phloem is at the core of the tree functions, moving resources such as non-structural carbohydrates, nutrients, and defence and information molecules across the whole plant. Phloem function and ability to transport resources is tightly controlled by the balance of carbon and water fluxes within the tree. As such, drought is expected to impact phloem function by decreasing the amount of available water and new photoassimilates. Yet, the effect of drought on the phloem has received surprisingly little attention in the last decades. Here we review existing knowledge on drought impacts on phloem transport from loading and unloading processes at cellular level to possible effects on long-distance transport and consequences to ecosystems via ecophysiological feedbacks. We also point to new research frontiers that need to be explored to improve our understanding of phloem function under drought. In particular, we show how phloem transport is affected differently by increasing drought intensity, from no response to a slowdown, and explore how severe drought might actually disrupt the phloem transport enough to threaten tree survival. Because transport of resources affects other organisms interacting with the tree, we also review the ecological consequences of phloem response to drought and especially predatory, mutualistic and competitive relations. Finally, as phloem is the main path for carbon from sources to sink, we show how drought can affect biogeochemical cycles through changes in phloem transport. Overall, existing knowledge is consistent with the hypotheses that phloem response to drought matters for understanding tree and ecosystem function. However, future research on a large range of species and ecosystems is urgently needed to gain a comprehensive understanding of the question.

ano.nymous@ccsd.cnrs.fr.invalid (Yann Salmon) 09 Jul 2019

https://hal.science/hal-02178452v1

[hal-02948737] Modeling the impact of liana infestation on the demography and carbon cycle of tropical forests

There is mounting empirical evidence that lianas affect the carbon cycle of tropical forests. However, no single vegetation model takes into account this growth form, although such efforts could greatly improve the predictions of carbon dynamics in tropical forests. In this study, we incorporated a novel mechanistic representation of lianas in a dynamic global vegetation model (the Ecosystem Demography Model). We developed a liana-specific plant functional type and mechanisms representing liana-tree interactions (such as light competition, liana-specific allometries, and attachment to host trees) and parameterized them according to a comprehensive literature meta-analysis. We tested the model for an old-growth forest (Paracou, French Guiana) and a secondary forest (Gigante Peninsula, Panama). The resulting model simulations captured many features of the two forests characterized by different levels of liana infestation as revealed by a systematic comparison of the model outputs with empirical data, including local census data from forest inventories, eddy flux tower data, and terrestrial laser scanner-derived forest vertical structure. The inclusion of lianas in the simulations reduced the secondary forest net productivity by up to 0.46 t(C) ha(-1) year(-1), which corresponds to a limited relative reduction of 2.6% in comparison with a reference simulation without lianas. However, this resulted in significantly reduced accumulated above-ground biomass after 70 years of regrowth by up to 20 t(C)/ha (19% of the reference simulation). Ultimately, the simulated negative impact of lianas on the total biomass was almost completely cancelled out when the forest reached an old-growth successional stage. Our findings suggest that lianas negatively influence the forest potential carbon sink strength, especially for young, disturbed, liana-rich sites. In light of the critical role that lianas play in the profound changes currently experienced by tropical forests, this new model provides a robust numerical tool to forecast the impact of lianas on tropical forest carbon sinks.

ano.nymous@ccsd.cnrs.fr.invalid (Manfredo Porcia E Brugnera) 25 Sep 2020

https://hal.inrae.fr/hal-02948737v1

[hal-02177359] Prolonged warming and drought modify belowground interactions for water among coexisting plants

Understanding how climate alters plant-soil water dynamics, and its impact on physiological functions, is critical to improved predictions of vegetation responses to climate change. Here we analyzed how belowground interactions for water shift under warming and drought, and associated impacts on plant functions. In a semi-arid woodland, adult trees (piñon and juniper) and perennial grasses (blue grama) were exposed to warming and precipitation reduction. After 6 years of continuous treatment exposure, soil and plant water isotopic composition was measured to assess plant water uptake depths and community-level water source partitioning. Warming and drought modified plant water uptake depths. Under warming, contrasting changes in water sources between grasses and trees reduced belowground water source partitioning, resulting in higher interspecific competition for water. Under drought, shifts in trees and grass water sources to deeper soil layers resulted in the maintenance of the naturally occurring water source partitioning among species. Trees showed higher water stress, and reduced water use and photosynthesis in response to warming and drought. This case study demonstrates that neighboring plants shift their competitive interactions for water under prolonged warming and drought, but regardless of whether changes in moisture sources will result in increased competition among species or maintained partitioning of water resources, these competitive adaptations may easily be overridden by climate extremes.

ano.nymous@ccsd.cnrs.fr.invalid (Charlotte Grossiord) 08 Jul 2019

https://hal.science/hal-02177359v1

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Productions 2019

HAL : Dernières publications

[hal-03889618] Soil and climate differently impact NDVI patterns according to the season and the stand type

[hal-02011754] Explaining the larger seed bank of an invasive shrub in non-native versus native environments by differences in seed predation and plant size

[hal-02624939] Using stable isotope approach to quantify pond dam impacts on isotopic niches and assimilation of resources by invertebrates in temporary streams: a case study

[hal-02436352] Single-image photogrammetry for deriving tree architectural traits in mature forest stands: a comparison with terrestrial laser scanning

[hal-04492051] Analyse de l'évolution de la production de truffe noire du Périgord (Tuber Melanosporum Vitad.) de 1903-1904 à 1988-1989 dans le Vaucluse

[hal-01972724] Influence of annual climatic variations, climate changes, and sociological factors on the production of the Périgord black truffle (Tuber melanosporum Vittad.) from 1903–1904 to 1988–1989 in the Vaucluse (France)

[hal-02903210] Habitats forestiers et forêts habitées

[hal-02320571] Quelle pertinence du modèle diversité-productivité-perturbations pour analyser l’influence des pratiques agricoles sur la diversité des prairies permanentes du Massif central ?

[hal-02437587] TOFF, a database of traits of fish to promote advances in fish aquaculture

[hal-02165403] Infiltration from the Pedon to Global Grid Scales: An Overview and Outlook for Land Surface Modeling

[hal-02621961] Améliorer la qualité des plants et leur taux de reprise

[hal-02411666] The commonness of rarity: Global and future distribution of rarity across land plants

[hal-02352504] The effect of tree diversity on the resistance and recovery of forest stands in the French Alps may depend on species differences in hydraulic features

[hal-02399726] The cost of deer to trees: changes in resource allocation from growth-related traits and phenolic content to structural defence

[hal-02263853] Annotation data about multi criteria assessment methods used in the agri-food research: The French national institute for agricultural research (INRA) experience

[hal-02629130] Identifying the tree species compositions that maximize ecosystem functioning in European forests

[hal-02372828] Soil N2O, CH4, and CO2 Fluxes in Forest, Grassland, and Tillage/No-Tillage Croplands in French Guiana (Amazonia)

[hal-02622295] Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

[hal-02432407] Large hydraulic safety margins protect Neotropical canopy rainforest tree species against hydraulic failure during drought

[hal-02626083] Genetic differentiation in functional traits among European sessile oak populations

[hal-02149053] Water and nutrient uptake capacity of leaf-absorbing trichomes vs. roots in epiphytic tank bromeliads

[hal-02625278] The effect of stumpage prices on large-area forest growth forecasts based on socio-ecological models

[hal-02118104] Are 40 years better than 55 ? An analysis of the reduction of forest rotation to cope with drought events in a Douglas fir stand

[hal-02181076] Air temperature optima of vegetation productivity across global biomes.

[hal-02391010] Life on the Edge: Ecological Genetics of a High Arctic Insect Species and Its Circumpolar Counterpart

[hal-02561718] On the need to consider wood formation processes in global vegetation models and a suggested approach

[hal-02184243] Geographical adaptation prevails over species-specific determinism in trees' vulnerability to climate change at Mediterranean rear-edge forests

[hal-02627690] From xylogenesis to tree rings: wood traits to investigate tree response to environmental changes

[hal-02311392] The functional trait spectrum of European temperate grasslands

[hal-02625305] Chilling and forcing temperatures interact to predict the onset of wood formation in Northern Hemisphere conifers

[hal-02628795] Acclimation and adaptation components of the temperature dependence of plant photosynthesis at the global scale.

[hal-02629182] Phenology of wood formation in larch (Larix decidua Mill.) trees growing along a 1000-m elevation gradient in the French Southern Alps

[hal-02356964] Alpha diversity of vascular plants in European forests

[hal-02501278] Wood formation and tree adaptation to climate

[hal-02154592] Accelerated flowering time reduces lifetime water use without penalizing reproductive performance in Arabidopsis

[hal-02052715] Compositional response of Amazon forests to climate change

[hal-02154543] Climatic Suitability Derived from Species Distribution Models Captures Community Responses to an Extreme Drought Episode

[hal-02623598] Altered stomatal dynamics induced by changes in irradiance and vapour-pressure deficit under drought: impacts on the whole-plant transpiration efficiency of poplar genotypes

[hal-02154587] Deciphering the main determinants of O3 tolerance in Euramerican poplar genotypes

[hal-03328388] Un outil en ligne pour accompagner le choix des essences forestières dans un contexte de changement climatique.

[hal-02154444] Biomechanical control of beech pole verticality (Fagus sylvatica) before and after thinning: theoretical modelling and ground-truth data using terrestrial LiDAR

[hal-02019962] Water-stressed or not, the mechanical acclimation is a priority requirement for trees

[hal-02624570] Antioxidative responses of three oak species under ozone and water stress conditions

[hal-02384139] Fructification du Hêtre et des Chênes en France : rôle des températures, du pollen et du bilan de carbone et relation avec la croissance des peuplements

[hal-02178457] The impact of prolonged drought on phloem anatomy and phloem transport in young beech trees

[hal-02177354] New insights into black truffle biology

[hal-02154544] Highlighting declines of cold-demanding plant species in lowlands under climate warming

[hal-02178452] Drought impacts on tree phloem

[hal-02948737] Modeling the impact of liana infestation on the demography and carbon cycle of tropical forests

[hal-02177359] Prolonged warming and drought modify belowground interactions for water among coexisting plants